222f763ed0b7758f17dacf7aa6dd6354 *DESCRIPTION
71a297b7454d251252d32c34b2184565 *NAMESPACE
1a878a7972e2a84bdbba56648952913c *NEWS
86e4fec5e891128289c37f66e423d0fb *R/assign_peaks.R
8a446ead9027e235e0111858c95be667 *R/broadenrich.R
ad53a47a75cd0f33f18088d83eaa1ca9 *R/chipenrich.R
41f3d912b05484a7aad8f16bd326fa3f *R/chipenrich_package_doc.R
121d5cecb29403c335cf2420e34276cf *R/constants.R
948c9ecf3a05549c398d7e859a0acadf *R/hybrid.R
fa325388c89ce15512a4ada3135eb77b *R/peak_weights.R
9ac416a84533ecf8de7825375a264ab5 *R/peaks2genes.R
90c7e57f74b17ca4f9685fdaa325994c *R/peaks_per_gene.R
6b52bce8ce10aeef86bce0868af6e281 *R/plot_chipenrich_spline.R
2cf143cb651e6de7ccdedc6258e62f46 *R/plot_dist_to_tss.R
8ba23ab14290777039f4f56248e2c01a *R/plot_gene_coverage.R
b303bd076872e457c9d2605660b632b6 *R/plot_polyenrich_spline.R
6ba8f91991580562cfc93e1b65e16f0e *R/polyenrich.R
33ae476c31263bb08e871e7766401208 *R/proxReg.R
defd9eb5157e90e3d514861dfbcbb6e1 *R/randomize.R
d93b686c14e442771293152cfa2e94cc *R/read.R
5ece6aca5ea344c5a2bab7b029aaf648 *R/setup.R
dd2e5a9cbde93134ca9b2383b345d7dc *R/supported.R
b712c2694c9c6016a8afca6e416ec84e *R/test_approx.R
9e3ee21652bc27a3ff63aed71a6949d0 *R/test_binomial.R
c2673285a3aeed9c7dbadb068d892b24 *R/test_broadenrich.R
9ebf3cc0fa1d2ac2c8bb564ed95f64a6 *R/test_chipapprox.R
fd64de474ae855aa03d3fa96c4c2f2cf *R/test_chipenrich.R
21ad833d7181bcc0cbcb18ee5c5cda0e *R/test_chipenrich_slow.R
dab9aa73cda227c2d3349e830e4c88d0 *R/test_fisher.R
e1b889d451f849ce2a7910d0b1b0b27c *R/test_polyapprox.R
a8ead8dde4ffe40628d3fc8cfe43f1e2 *R/test_polyenrich.R
015aa4611db93c03749a04d8ca1105a2 *R/test_polyenrich_slow.R
4c84ec111a43ceac9ff81a463668f458 *R/test_polyenrich_weighted.R
c415a5ee48a13ab61bd2345a596d96ba *R/test_proxReg.R
4e36ac30619e6003a69c133effbd8040 *R/utils.R
b967f441461d4395d032e0df475139ca *README.md
80ff075233ce8d7188440bb217e1dac8 *build/vignette.rds
4b366b0b6b6e2b4ccd8639e625f0458d *inst/CITATION
5630cb577a6664086e1709edcfb81652 *inst/doc/chipenrich-vignette.R
fdc04d1be834b1b195be9bcca9699dad *inst/doc/chipenrich-vignette.Rmd
aa32567e4e2230769918c18bb260dd5b *inst/doc/chipenrich-vignette.html
daf2e1b10b5f938e03bb4edd0fe39c8a *inst/extdata/test.bedGraph
43b4dd0c6b9e45505ac02a5acab1b687 *inst/extdata/test.broadPeak
b5d9a1b30e7fde2cd56fb270f95043b9 *inst/extdata/test.broadPeak.gz
76efaf6fd37bd37f6e590c190f8402e3 *inst/extdata/test.gff3
2893d8634c580b5000be435d05d14e52 *inst/extdata/test.gff3.gz
1a4a240c98866bb86f07ea5ebb82a31e *inst/extdata/test.narrowPeak
c8e28e78842f7d47e3cbb4d7a349b46e *inst/extdata/test.narrowPeak.gz
7ef3aac8b5e0aeb9c7e80978faf83698 *inst/extdata/test_assign.bed
f9459bdda10ca55d4970752bea4eb757 *inst/extdata/test_geneset.txt
57109490816b0875ef25adc65b84f7ac *inst/extdata/test_header.bed
57109490816b0875ef25adc65b84f7ac *inst/extdata/test_header.txt
ced70c7e646b71b7d6a550fb817f952a *inst/extdata/test_ldef_geneid.txt
0db7be5284fd973ac9ebc7f0b479c5c0 *inst/extdata/test_ldef_noextras.txt
da97e3c2a15b201a08409a210f934e6d *inst/extdata/test_ldef_nosymbol.txt
9b2afffb30947ab2d911e00a58eeb869 *inst/extdata/test_ldef_symbol.txt
578e4e0346c698c9407357084362749c *inst/extdata/test_mappa_badhead.txt
eaf3a48de0c37196f410c6cd59ec1098 *inst/extdata/test_mappa_dup.txt
c49115370c3a9d41284454d270a4faf4 *inst/extdata/test_mappa_good.txt
1ce7aa7fcac8a95f2dfde4e192f71111 *inst/extdata/test_mappa_neg.txt
f8cb115b43fec720859fba9fe8f5c571 *inst/extdata/test_mappa_one.txt
bc0f475b5226cb5972737e1b4464fb88 *inst/extdata/test_noheader.txt
715d64186d6f520ab1eb26a15151d734 *inst/extdata/test_ppg.txt
8fb35664e51fa76aa080a7f9187f0419 *inst/extdata/vignette_genesets.txt
24870373582ab6a1d2b93fe100676702 *man/assign_peak_segments.Rd
65c440d6f9e16d37a62d7a53f3cb8762 *man/assign_peaks.Rd
28a88d074a252501e091f5bd2c283ed8 *man/broadenrich.Rd
efb8c4e1e0046ea66869ce02f621ed9f *man/calc_peak_gene_overlap.Rd
2ed7fb6828e17f9b8a8f23b06a6d20e4 *man/chipenrich.Rd
f9486c2285c6effc1e283c5a653f2eef *man/chipenrich_package.Rd
bf00c3302d202ba651c74de97fb72aa4 *man/filter_genesets.Rd
ea8f248499a7d4acfe1074c589811c04 *man/genome_to_organism.Rd
73a246717d8fdc6dad825220e268fff0 *man/genome_to_orgdb.Rd
62ddddcc614af78365970d2afa2a076b *man/get_test_method.Rd
9fd9b8943286a20684299de921a55401 *man/hybridenrich.Rd
bd1bea7c4f6c0d0d0d8c122d91cc4df8 *man/load_peaks.Rd
52838b43617112e3468193987dac27bc *man/num_peaks_per_gene.Rd
a712cd16b8d147a5b73c52e4e0f18524 *man/peaks2genes.Rd
ff9578df74ee7d1e7f384c04d448ff9f *man/plot_chipenrich_spline.Rd
bb279a21d6181eae3ffcb468283f328d *man/plot_dist_to_tss.Rd
30415f94c56e6656f2981e506146460b *man/plot_gene_coverage.Rd
b4a959344d99377ce10e973af8a4c52d *man/plot_polyenrich_spline.Rd
399acd86c839745e4fe3e7f4c943e18f *man/polyenrich.Rd
40e9a854b41b780a0afaa91849328b07 *man/post_process_enrichments.Rd
a134aaae8d7c5131f01f0381469ee5db *man/postprocess_peak_grs.Rd
0c18a0a5196048a27dab7bb551ca80c2 *man/proxReg.Rd
c1931d6e2975e33f13b85cffbe637730 *man/read_bed.Rd
d44f348299519ab206e21b4480164f1e *man/read_geneset.Rd
302e075073ff397aa85da0aeee246b84 *man/read_ldef.Rd
6e1f8df0faeedd8e78f274381a4011b1 *man/read_mappa.Rd
589eb623ff497db276125d6ddec905e7 *man/recode_peaks.Rd
3b449f8b2cd6fdbe6b693fefd666fadd *man/reset_ncores_for_windows.Rd
2bd8605db25215bf990fe76394f12bfa *man/setup_genesets.Rd
4c120703140a4f799115c85c6d49661e *man/setup_locusdef.Rd
10032ce58de44cd40d508756cba10fbb *man/setup_mappa.Rd
224401f454febb71ede7441ea233992a *man/supported_genesets.Rd
ec962e795058280330599e32f5850467 *man/supported_genomes.Rd
7908fae63d6892ef7cfecbc34bc0c032 *man/supported_locusdefs.Rd
fbe5fafe599b097a3900a6150a5b6046 *man/supported_methods.Rd
0bf7e0fb2230e25c53a3b8c2cc66a07e *man/supported_read_lengths.Rd
17b5ed540ce66f13c6e0ede933ae5e72 *tests/testthat.R
dda576b480fa1d7e28cc8d44de5774f3 *tests/testthat/test_0a_utils.R
0afa72afbdc3cd8ff7dad5f1a95c6856 *tests/testthat/test_0b_setup.R
d9700fb5d4067f7ffec80a14a1d966f8 *tests/testthat/test_0c_supported.R
7cb471d0851a21eed5d56e175a4aabc5 *tests/testthat/test_1_read.R
1752872115e19dbaeaa575debf75132f *tests/testthat/test_2_assign_peaks.R
664f4242bc71da57c2d2876d54e76a20 *tests/testthat/test_3_peaks_per_gene.R
b4abe72effb2483809765edf8da331e9 *tests/testthat/test_4_randomize.R
ab0fb660c7a0cc2a0ef7a6ff1b6c2748 *tests/testthat/test_5_chipenrich.R
14c6c8001b739509bab8a19f6dfbccad *tests/testthat/test_6_qcplots.R
fdc04d1be834b1b195be9bcca9699dad *vignettes/chipenrich-vignette.Rmd
