a37d51f644c6b62acf882903c6832399 *DESCRIPTION
787aed0cb56ce2eead241708cb05da61 *NAMESPACE
b4a77060b8dfa5100dedc0755a80bf08 *NEWS.md
7784af8080715ecbf4678ef425d4542d *R/all_classes.R
ce203cf32a7a10d6136ae287a877cb30 *R/all_extra.R
7973c1de470002099e78f10d7473d4ae *R/all_functions_v8.R
699b53914d0a4a90ddb4b7f8597ac6f7 *R/all_internal_v3.R
57fe2f096934c08029ba53dc3e3e3fc0 *R/all_methods_v3.R
dac9931a4407f5f0785b783a8e24abd8 *README
fba282093e394eba9d58ac1936871ac2 *README.md
2adced87b7d248b2a590f3d1162bdbf6 *build/vignette.rds
0e01bd17a752054937852dacd2ac4980 *data/ThreeConditions.rda
c8d16aedb8479a32f20f582b909ef730 *data/TrackCellsDataset.rda
57c5562e91ae55e76e8bbbd8a41a7b71 *data/TrajectoryDataset.rda
f8a438cb54114d1101c95fe4ebcf2018 *data/WSADataset.rda
2b37a699709b0ed88bfaa50561cbf800 *data/preProcCellMig.rda
eb8d8d2622b5b593a3fd6cd9967749b6 *inst/doc/cellmigRation.R
34f999b5f94461e2a684b6e88a757370 *inst/doc/cellmigRation.Rmd
2d2eca18388bad6dc9deadb202057891 *inst/doc/cellmigRation.html
809c96a5b47c9419fff0a1577fb08514 *inst/unitTests/test_cellmigRation_core.R
2f344e4549d5a5fde7a919d98c09e3a5 *inst/unitTests/test_funcion_examples.R
13a9843b645689c3122da31f9e5ee1cf *man/AddDimension.Rd
cb6ee557c808dbd33ed84e37bdd6121e *man/CellMig-class.Rd
2ed638d31f1ffc677653c1b5b10fb368 *man/CellMigPCA.Rd
5d94d8cd15e2c381eb18555b6599bb2d *man/CellMigPCAclust.Rd
8df5843a6e795d817a3a3921d36cd665 *man/CellMigPCAclustALL.Rd
f9a9d5c0ad8a75e2ed9b6e03ab8a59b1 *man/CellTracker.Rd
4bc3874da6d1b5096f1a14f87f307dd5 *man/CellTrackerMainLoop.Rd
9a78ee950f242de0d092fac066b6e618 *man/CentroidArray.Rd
639bba1606a67390f71df7127792e572 *man/CentroidValidation.Rd
83d7c45f206f2bc5310f0c926e28b582 *man/ComputeTracksStats.Rd
3ad90e03cdd314efc3e1acb1a7452216 *man/DetectRadii.Rd
b46b402ac26adc848405f010fb2dcf5e *man/DiAutoCor.Rd
916650a9f1675560fd0c7d212405d306 *man/DiRatio.Rd
b1db6fa497a3e73524f680eb9a28b8b3 *man/DiRatioPlot.Rd
ad01f3e3db81d0282cbd30702b9959b8 *man/EstimateDiameterRange.Rd
079116ca17074e91e632d92c31b725bf *man/FMI.Rd
dc3aa5d0eb39d620fdc22d6d665a7cf4 *man/FianlizeOptiParams.Rd
f3fa98370c0b4991b74c742905d51f8d *man/FilterTrackedCells.Rd
0c3467bb4fe461e28db7d754082346dd *man/FinRes.Rd
11e36d302b81aeb401423a3323d4d07d *man/ForwardMigration.Rd
3fa3f2a0c17f32b290c9db3cfcc7f6aa *man/GenAllCombos.Rd
d6cc32d0e559f92039816cd90340e0b0 *man/LinearConv2.Rd
733f8c1ec82fd1ee94647a261195eda5 *man/LoadTiff.Rd
3d9011f423bbae1fa7739061bd7660ff *man/MSD.Rd
5f50928a2138d3209649689c0fba219e *man/MakeHypercube.Rd
63227803b93bd5cb5d050c2b424712e6 *man/MigrationStats.Rd
2cf217b76074bc533edcd501aa4f5127 *man/NextOdd.Rd
33afd7c55e14d8f868135babd3194c8c *man/NonParallel4OptimizeParams.Rd
0a4c72dad370509b886b2a7ede32ded0 *man/NonParallelTrackLoop.Rd
d75e73393b9f0fde5bd69ebc41188e5b *man/OptimizeParams.Rd
c7f8a78af38afdd55feebd971b9ca954 *man/OptimizeParamsMainLoop.Rd
b0558a766168a519b3f489dce155fa8c *man/Parallel4OptimizeParams.Rd
38c025ea3e951b2198062d593c34352f *man/ParallelTrackLoop.Rd
02508a4eaf03c4d4c429a6c0e55f9506 *man/PerAndSpeed.Rd
f5f0c8791dc36b5d69231f47000abb87 *man/PlotTracksSeparately.Rd
d28afc941d68c309a629980d9a82b990 *man/PostProcessTracking.Rd
a6d31e8fae28f02dae5875ad6637d1ea *man/Prep4OptimizeParams.Rd
3a5a1f896b665f0c8f9be7c20ae6052f *man/ThreeConditions.Rd
da26a6c0fdf79023c3a1bd7388759d88 *man/TrackCellsDataset.Rd
de4d5f9e614ab90b6724a333dd980469 *man/TrajectoryDataset.Rd
a473624d2a1bda067a7e121ea5a0b99c *man/ValidateTrackingArgs.Rd
4cc05592a9932fe2ebed82275656eca8 *man/VeAutoCor.Rd
8756f1fbf59b60a7834bccf9a438b083 *man/VisualizeCntr.Rd
1320bde249801f515f755275a7201de1 *man/VisualizeImg.Rd
2d6db496d119af54223e84a29718f174 *man/VisualizeStackCentroids.Rd
49ae72cea4b0de7f292e5636e627a637 *man/WSADataset.Rd
b96f68b2c1f2a6b20d392af57bb1cd77 *man/aggregateFR.Rd
df84745e5f4fdb0dc3eb874ffd773604 *man/aggregateTrackedCells.Rd
0a4d77118cdf93b6f62b0bc0b494c19a *man/bpass.Rd
f2f256e28737e42cc0fd0dd680b43c3e *man/cellmigRation-package.Rd
806d1b0d4edcc3d2b499e939adf052b0 *man/circshift.Rd
2b114258dc57acb5f9900432bf2b07e1 *man/cntrd.Rd
7088105fe3e3ef1116fb86d57e756052 *man/fixDA.Rd
c70b407f4c2bd0812023d3547ada80e1 *man/fixExpName.Rd
380d46a6a058a3e5ae9dfef5bb70edf5 *man/fixFM1.Rd
c604bd9f63b6a49e9687a346352ed681 *man/fixFM2.Rd
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1cb00dedcfadee3f9a17325c62fd47e7 *man/fixFM4.Rd
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91b9a430c2f9d86dc500f3f72069df64 *man/fixFM6.Rd
cf08f5c0753e634abc599fc9f498dd2d *man/fixID1.Rd
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24e1b3083d9d840b29c1b3ce90a9c7ce *man/fixID3.Rd
58a55990726a6581effa2cc2a811a584 *man/fixID4.Rd
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48aeaed48331433e1d8738117d73b31b *man/fixMSD.Rd
f23b6ca6c8abc4b4117f8252a8f85ffc *man/fixPER1.Rd
984787f2fdff11b94babdc6a4f39dc60 *man/fixPER2.Rd
371c9209f73b1b7ee743780f838041b2 *man/fixPER3.Rd
dbbdb2cd7fd44616e80529631526c768 *man/getAvailableAggrMetrics.Rd
66ee6b5c079b4217b944c8adfcd9f789 *man/getCellImages.Rd
8d56e67a3d0364076df3b7551c38fe11 *man/getCellMigSlot.Rd
181167928facebf31cd5fe5809f7bac0 *man/getCellTrackMeta.Rd
8ec7ed9d972ea3fc8d7a10d4d2e36348 *man/getCellTrackStats.Rd
7f60c1ba3688c8a40f62971f85b9daa5 *man/getCellTracks.Rd
4442ad11240c89a08bf2746f058ac446 *man/getCellsMeta.Rd
2e87b708f94caf64806c8eb6a472b64d *man/getCellsStats.Rd
b8ab9e263f0d8b7222d59bdc7cd45d3d *man/getDACtable.Rd
b40fcdedd3345a1c743d24fdb885b097 *man/getDiRatio.Rd
b2fd27a2ce0ff622321603a2c01ca8b5 *man/getFMItable.Rd
03e4461d9b7d7afb9e8592958c70de66 *man/getForMigtable.Rd
37ad0fd225d5c5245f64c4c32c461b52 *man/getImageCentroids.Rd
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249ea57ee5d128ac8b5fe8d0719299c6 *man/getMSDtable.Rd
a00469b766c9e9fd284ffae018efcb76 *man/getOptimizedParameters.Rd
c787c52486974056fdc227f2ee7361e5 *man/getOptimizedParams.Rd
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9e928c422fea0c3ec6e943aff9e4323b *man/getPopulationStats.Rd
22d5f1661080fb93be8fca636caf1340 *man/getProcessedImages.Rd
5dda08b7d7a9a84fd45a30530e007f5a *man/getProcessingStatus.Rd
201f4f76c74693a9f771c700115f7417 *man/getResults.Rd
1b5e5978533855d21c0658b56c9fd579 *man/getTracks.Rd
a6c6f0dcb3400242850b000b979917c7 *man/getVACtable.Rd
e734a3005925611ffa79599194d0b7db *man/initializeTrackParams.Rd
00fff261140a2ac972833541b031c64d *man/innerBondRaster.Rd
6c465fceb0afb8949edaf7dcf2b075e3 *man/internalPermutation.Rd
25595be13ef42e57816b5b96a66db3fb *man/matfix.Rd
ab2dd6c47746c3a92ec773f429faaead *man/nontrivialBondTracking.Rd
a1b4a3b84640d9899612c0df640ac53c *man/pkfnd.Rd
b88a57550e2193f706a321af8860b54a *man/plot3DAllTracks.Rd
a3248edd70c2626421008b22825bcc89 *man/plot3DTracks.Rd
5de3ac6c3bbd70c2f5bf03500e07ffa5 *man/plotAllTracks.Rd
5fc12b0361df34f0e12b184f207a4472 *man/plotSampleTracks.Rd
f58de40e54f2ec4cb6e9b1a7de5e2e88 *man/preProcCellMig.Rd
a21c479fe227139b86635e3c24a9101e *man/rmPreProcessing.Rd
08f8d66c014d2d72a570e5871041fb90 *man/runTrackingPermutation.Rd
bbd5598a197bcba105bfa93f9c53d8f8 *man/setAnalyticParams.Rd
913a7d837d57cb686487d2cac328462f *man/setCellMigSlot.Rd
91922d13832bbc15c96dacfcbf9e2a18 *man/setCellTracks.Rd
8089f67ab0dcbc4bfacd463e0a7fb633 *man/setCellsMeta.Rd
a412e9b8266794d13c78f8ad79a075fd *man/setExpName.Rd
6539e49bb31e4df52a6c9691d3fa43b2 *man/setOptimizedParams.Rd
97979e8c40514e786bfc4d386930d097 *man/setProcessedImages.Rd
4b5364b3ba8c119ab8c6db21e497cd3d *man/setProcessingStatus.Rd
43f36fd71409d2bf364114c39c6882da *man/setTrackedCellsMeta.Rd
52757e66afc7ea34b2e47a9cf5101487 *man/setTrackedCentroids.Rd
85aa9d8eaf23442c0db73f5dfd93bf75 *man/setTrackedPositions.Rd
1c483cbc8910f340330efc090c61394a *man/setTrackingStats.Rd
028c353645110694c7718413974bff43 *man/sinkAway.Rd
5f5812bd0d1e4432dadda7bc4e4f10dd *man/subNetworkTracking.Rd
50f0136e41130e63ee4721612c81d397 *man/track.Rd
fd624541ee1f7c7f94859bc9f037fb5e *man/trackHypercubeBuild.Rd
efce1acd9d33125c25fc0385358ebb17 *man/trackSlideProcessing.Rd
b80d67186a1b1c4a3fd1a7931e584b4e *man/trackSlideWrapUp.Rd
4101082033b04eaa56315a20a4402c4b *man/trackedCells-class.Rd
e99d01e65173e82a3e23edccf1300479 *man/trivialBondRaster.Rd
6eb44afcba4998f4aa505d5867b8c541 *man/trivialBondTracking.Rd
722202f7236a6323f38931ea50c1b5f1 *man/visualizeCellTracks.Rd
66331b6dcc1cca44a8f5f3075237c075 *man/visualizeTrcks.Rd
66ce5691adff9661373021165864c6c5 *man/warnMessage.Rd
3b6e071f02e67318cdf1af26cd08aa31 *man/wsaPreProcessing.Rd
4411f2b93c08bdaca3393de5bc0d34ce *tests/runTests.R
34f999b5f94461e2a684b6e88a757370 *vignettes/cellmigRation.Rmd
