21285d750aed963641bd277c4ec0197a *DESCRIPTION
8af3bd6e8e2bcbff529dee92068c5ec7 *NAMESPACE
dcc0ac4caacfccdbd259277285355c43 *NEWS
8e7006087bcf7f906937ab658c602c04 *R/contrasting_functions.r
aa17004c723c7070e402958ea53e9ffa *R/data.r
30e0c893e11602fc7dcb9bf9ae64d657 *R/group_labelling_functions.r
9bf443f5db507b7a960a028cfb1e289c *R/loading_helper_functions.r
32b418e68f575926a32fe9361a2f2996 *R/plotting_functions.R
020fe873110fcccdf62c60c9eb303bbf *build/vignette.rds
9780967d7c0ef0172e8301918a76b707 *data/de_table.demo_query.rda
e9f57c4b948954ebf632fba45a289b83 *data/de_table.demo_ref.rda
23e45793e34bf856ba258c3ad6dd9027 *data/demo_cell_info_table.rda
5ab9c784033c2a1e00502486de7fbc2b *data/demo_counts_matrix.rda
4fec74210845a51473439165cfff7f87 *data/demo_gene_info_table.rda
80d31f6580e9b0df850febf3c819ccaa *data/demo_microarray_expr.rda
f7ef71aa8acc525429f1c3f36913256a *data/demo_microarray_sample_sheet.rda
893f57ef386625188f4eabcce5b99ba5 *data/demo_query_se.rda
5baee7615dcccb4f26222b475e51948c *data/demo_ref_se.rda
12cbfdb1a7eeae4f4dd69da75422f547 *inst/doc/celaref_doco.R
fba8f0aab2439a8a73e79eb6b3416284 *inst/doc/celaref_doco.Rmd
915b5a96971ec0870bafb67d7d4f28f7 *inst/doc/celaref_doco.html
ccf4af2598ea2cda7fa7b60b47ad2b2d *inst/extdata/demo_microarray_expression.tab
22a5b95cd3a83dbaab39456d23586b69 *inst/extdata/demo_microarray_info.tab
d92cb6d5aa2e23def3140d5187b2ef53 *inst/extdata/larger_doco_examples.rdata
7d8cad026c98acf432fe15024f1be754 *inst/extdata/sim_cr_dataset/analysis/clustering/kmeans_4_clusters/clusters.csv
018a90e7434490320891601dc85a9a0d *inst/extdata/sim_cr_dataset/filtered_gene_bc_matrices/GRCh38/barcodes.tsv
1ab12d391a5f686c8efe9bbfc41c349f *inst/extdata/sim_cr_dataset/filtered_gene_bc_matrices/GRCh38/genes.tsv
ac13e0a8d2de69da2f363e51038ce9b1 *inst/extdata/sim_cr_dataset/filtered_gene_bc_matrices/GRCh38/matrix.mtx
add307bd28d573ef2535c5f2625f69ae *inst/extdata/sim_query_cell_info.tab
4ceaa7fecd76587fe12a3cfe26a757e4 *inst/extdata/sim_query_counts.tab
b140009eadfeb78da9f6b6492e83a370 *inst/extdata/sim_query_gene_info.tab
fa50a7d745a37179e93f13d5683a905e *inst/extdata/sim_ref_cell_info.tab
e6e242ba0af7cf200f68bc676181cf7a *inst/extdata/sim_ref_counts.tab
b140009eadfeb78da9f6b6492e83a370 *inst/extdata/sim_ref_gene_info.tab
e72c3aefedf9c019562721145f6e5d25 *man/contrast_each_group_to_the_rest.Rd
d4be8e88bf0252b70e8c7e5e2eff7daf *man/contrast_each_group_to_the_rest_for_norm_ma_with_limma.Rd
8eaf61802c8ae43f4c8ec320cdac4b1e *man/contrast_the_group_to_the_rest.Rd
62a157296d94e6af68357359b251c87c *man/contrast_the_group_to_the_rest_with_limma_for_microarray.Rd
024dd8507280aa483b949d203d06247d *man/convert_se_gene_ids.Rd
94ef96bede3b798da75c417a17d48876 *man/de_table.demo_query.Rd
80af4299aebfa351170d1fc28bc5c76e *man/de_table.demo_ref.Rd
20110b8dd6ad4ddf33b1296453c86e96 *man/demo_cell_info_table.Rd
c4d0826aa978938486e75463390c6d2d *man/demo_counts_matrix.Rd
e6f5aacb6c237b8bb9b10dfe4b73b187 *man/demo_gene_info_table.Rd
74b9513e79fbea94dce5f6cf81c3019b *man/demo_microarray_expr.Rd
e861047138c0aabcf12f3e3a3e29f082 *man/demo_microarray_sample_sheet.Rd
4688fea721e98f6c5aa832e912b9d7fb *man/demo_query_se.Rd
502579dc5b113e4c349f2dcad30439c2 *man/demo_ref_se.Rd
425cadac54c8883264208591e41d5845 *man/find_within_match_differences.Rd
d2db3e28bba1e983d36735768d10cc78 *man/get_counts_index.Rd
2e4c55508fa2bebef63ee243285c330f *man/get_inner_or_outer_ci.Rd
29fe4830491bff86377c465c3220384a *man/get_limma_top_table_with_ci.Rd
d0d51e1367e8910d1ebd59ec06a91a8a *man/get_matched_stepped_mwtest_res_table.Rd
263bd5eee9cba2a8716450f383adc00d *man/get_ranking_and_test_results.Rd
4dfe6b9d7c91c607c1b12128c9e57975 *man/get_rankstat_table.Rd
487ef6dba514b57364592fde652da2bb *man/get_reciprocal_matches.Rd
ff1e52f4ae843b8657c64bf469fe0614 *man/get_stepped_pvals_str.Rd
03d1a97b873fe9307a587a50a603d5ca *man/get_the_up_genes_for_all_possible_groups.Rd
f295bfe6d56d88c8847d887d7b727e62 *man/get_the_up_genes_for_group.Rd
09bccc3f31dae91d22927ede62b2397d *man/get_vs_random_pval.Rd
a6139e6c2e43debdcd88230a487971bc *man/load_dataset_10Xdata.Rd
18ec0989755a9fe3ec268d6713d671f1 *man/load_se_from_tables.Rd
60cac272a27a2b7b2abaa38ea76c64bd *man/make_ranking_violin_plot.Rd
819f21bf5add690c7e1d1f1783b79f98 *man/make_ref_similarity_names.Rd
7e57cb9403ca123d7cab110da2689e72 *man/make_ref_similarity_names_for_group.Rd
b35daf47e4b5beff41f85a61aa874faa *man/run_pair_test_stats.Rd
89d7fab773b13a67309d4b5d77026f0e *man/subset_cells_by_group.Rd
d2f832bdf561019bc818abf2031fe257 *man/subset_se_cells_for_group_test.Rd
fdd03b661c52d7d276020b0f6a960ab1 *man/trim_small_groups_and_low_expression_genes.Rd
4b5804381b860323e187d4a0a1eff75c *tests/testthat.R
37919ca9f13949fb2ad18260f79efcba *tests/testthat/test-contrasting_functions.R
5512515254ec07e88e6955d032d05324 *tests/testthat/test-loading_helper_functions.R
4eb1a3280c9d1c9febf5e71ec7bd788a *vignettes/celaref.bib
fba8f0aab2439a8a73e79eb6b3416284 *vignettes/celaref_doco.Rmd
9393bbce27eabdb7e923e19fd02b6a46 *vignettes/images/pbmc4k_cloupe_kmeans7.png
de9eb4f128f28fabc139213bf0d27723 *vignettes/images/violin_plot_example.png
973cbf2f7f01659655f6b63c97a69c5e *vignettes/images/workflow_diagram.png
