3d026af493781ab8b1fb80ccc3e00136 *DESCRIPTION
03ef705a913cd9ea7151a5715d568893 *NAMESPACE
964065a7d7c49bd1d375f2988fef0df5 *NEWS
1e2924db058ab521a143c562e31f8b96 *R/calc_perturbation.R
41053a8ec00471b011008e4782cdb818 *R/datasets.R
7850f56b359d436c89443e0d1881225a *R/find_affected_nodes.R
33be32f8483ab603e89272751608c88d *R/find_iteration.R
6c69812758bff09c787a52177e4a8507 *R/find_node_perturbation.R
63c156629ec034f9b116c90e9086e7d2 *R/find_targeting_nodes.R
b713ee466d593f9d3b3d29c052bbba88 *R/globals.R
0023f2ad65cb4198db1e6ecf4072109b *R/priming_graph.R
24434e63f6416f33018865355b4076af *R/simulate.R
aca47d49f14a342f6820d4d3b69e50d7 *R/simulate_vis.R
d8793f28f30914812edadd0e58f609ec *R/update_how.R
2c3a642130ab704d571def8ecda79c53 *R/update_nodes.R
0d87a3d3f2057ecec5ceceea0cbd0a96 *R/update_variables.R
6f3a70fc8182103efb77f49de7db37df *R/vis_graph.R
0b492990f574b70a5669fc5d9a45a907 *README.md
7dc5bfa5524a63deeec5034e23390fcc *build/vignette.rds
3f982758ebf2a0797aa2969ae426caa9 *data/TCGA_E9_A1N5_mirnanormal.rda
251677a7130482b02d46b7756dc86cae *data/TCGA_E9_A1N5_mirnatumor.rda
d71748de0182dbd7556fc0de93207175 *data/TCGA_E9_A1N5_normal.rda
fd36b4006615c1075954a7d2f3b081fb *data/TCGA_E9_A1N5_tumor.rda
1bf323611a30755e46492d3d12c07562 *data/datalist
4eca466956bbec13d7ff370d4e026769 *data/huge_example.rda
dac8ba6ac1a5e865f1b5be17c519b94b *data/midsamp.rda
6fdf2679ced2800d7a73c4ba86cc7192 *data/midsamp_new_counts.rda
82cbc58475d995bff1a14a3543617dc3 *data/minsamp.rda
0a6cce61be5e9c2b04f9ec0214b92989 *data/mirtarbasegene.rda
db9a61417f0fabfd6ef321b0d7fa7653 *data/new_counts.rda
95e5d45975229937518f316b57903353 *inst/CITATION
bfe5d9e9085798220556c1bb54734080 *inst/doc/auxiliary_commands.R
2e5d1fc2be6a7c8c4a59c1e3207f2627 *inst/doc/auxiliary_commands.Rmd
461755e128cc45c2973bf05131429180 *inst/doc/auxiliary_commands.html
fff7e5a436ceb35c03eebc011083e06d *inst/doc/basic_usage.R
0dceab1847fd1430957ebebf66e107d7 *inst/doc/basic_usage.Rmd
71e02b649500aa72a0f3f294814cf6fb *inst/doc/basic_usage.html
4f529d81bb12d56088414b22fd30929e *inst/doc/convenient_iteration.R
7dba3faebc6094348f213bbfc56f2d99 *inst/doc/convenient_iteration.Rmd
31b61d0cb6d19f2ef63af630eb5691f0 *inst/doc/convenient_iteration.html
bb4e3380e5d7bed0348622df2021e06a *inst/doc/mirtarbase_example.R
9d2ae7db3d3cb9c1f3419c809e0d68bb *inst/doc/mirtarbase_example.Rmd
8c7b1f2f68b167c9b30f302810364c0c *inst/doc/mirtarbase_example.html
44870473f2a12314bf022ea7a5f9607b *man/TCGA_E9_A1N5_mirnanormal.Rd
996428778f4c1ff9de107f4f4039a6f5 *man/TCGA_E9_A1N5_mirnatumor.Rd
4a12e722522604200d250d6bf4ffd5ee *man/TCGA_E9_A1N5_normal.Rd
9b920eeb0e20ca680be76b05088c1ac1 *man/TCGA_E9_A1N5_tumor.Rd
635c204b375213c274419a225bf26389 *man/calc_perturbation.Rd
d66c6a91098e1c098b49577418649cb5 *man/find_affected_nodes.Rd
9b290c178fe86cc82a9098b31bc3558c *man/find_iteration.Rd
ee9e99fcc93063766a3d0ea8d06eb583 *man/find_node_perturbation.Rd
0bcb9be95f1765f616cfbb86514f6a6e *man/find_targeting_nodes.Rd
586a7dcc4310a9cfb3829db88bcf8ec9 *man/gene_knockdown.Rd
956d8a205bbd6deb3354636ec1f33f21 *man/huge_example.Rd
887902543d43b9e1e119818b0836ec3f *man/midsamp.Rd
1b214aba7bec9d11a07468ae522d580f *man/midsamp_new_counts.Rd
5428f331188bae0196b178c13452ba9d *man/minsamp.Rd
a84bc567be16caa229b38b242b2bf5ed *man/mirtarbasegene.Rd
738dbc875586d5cb1abe11d86e4b9056 *man/new_counts.Rd
4b5737168ae0c327cd45b70da228c50d *man/normalize.Rd
71d1b2e2963c34f34e849e5fc27b8f15 *man/prepare_rhs.Rd
a637db85a0518ab97c471b5195ce2117 *man/prepare_rhs_once.Rd
7610d8930b9ed48d9c9d95dc1c4c330c *man/priming_graph.Rd
4dd77b638c61b45d1b1cd72a2f920bfe *man/simulate.Rd
1d920af2631b60e9654cef924298f843 *man/simulate_vis.Rd
6a29b6be8a9e674cf6b03798f8f62ab7 *man/update_how.Rd
2bfee3deae3ae90115dc1633afa2cf66 *man/update_nodes.Rd
45f90e26e47b5f385b09b75cb9f36083 *man/update_variables.Rd
8a162efd339926f47e0b6ad9842d520e *man/vis_graph.Rd
975d29cd9dc721d71f2ac82f54298988 *tests/testthat.R
e52339682692782a84e1084fa08e820e *tests/testthat/Rplots.pdf
8f2c6f425fa6cb1ba583f0332747d64f *tests/testthat/test-data_convertion.R
835b05a64695b13b556a4840d0119397 *tests/testthat/test-iter_perturb.R
35341856999b4a403a041b22d55fe03e *tests/testthat/test-significant_node_function.R
932e8aa665d035d4dd4a4ccbb657158f *tests/testthat/test-updating_variables.R
2e5d1fc2be6a7c8c4a59c1e3207f2627 *vignettes/auxiliary_commands.Rmd
0dceab1847fd1430957ebebf66e107d7 *vignettes/basic_usage.Rmd
7dba3faebc6094348f213bbfc56f2d99 *vignettes/convenient_iteration.Rmd
32000a49ab2c9b11b616c3ba2ab0c04e *vignettes/gifs/Minsamp_Graph_After_Each_Iteration.png
1655f5aa9a54a0b4f0e12fef3e3da739 *vignettes/gifs/con_iter_chunk3.gif
953aac8b2e5c614a62e9124f322378b9 *vignettes/gifs/con_iter_chunk4.gif
08780674aa6078b67f1bdbd3a08e60a6 *vignettes/gifs/con_iter_chunk7.gif
1a59f3c69de03497fa793aba0b23028b *vignettes/gifs/con_iter_chunk8.gif
d2596b8c69b446dd10581cdf0f532056 *vignettes/gifs/model_vignette.png
4aeb22d5c903e0aca476eb2fc607207a *vignettes/gifs/realexample.gif
c9d103fe6c86be53eccc06e1b80a4ac3 *vignettes/gifs/small_sample.gif
581941debb166d187d7a61ba60607f75 *vignettes/gifs/small_sample_chunk10.png
9d2ae7db3d3cb9c1f3419c809e0d68bb *vignettes/mirtarbase_example.Rmd
8074c98376a64ec147c1d6945992abb2 *vignettes/ref.bib
