b7622f7f5940e5704234b9f65013fd0a *DESCRIPTION
a833bc0953cbad9bd558349fdc6662ca *LICENSE
0ebff65959a5e04abe4c90486e53ec1a *NAMESPACE
35085a07bf4d1859a2ad0ab10633b6cb *NEWS.md
9b5781a6c6c9fdfe866cc998dbc6d68b *R/CMap.R
15cc9177c18e041e6d16d436e69b8021 *R/ENCODE.R
7819aa0af071d5f1cea61726f7042378 *R/cTRAP-package.r
a61d661be05d358449626d96c026452b *R/cmapR_subset.R
a540bd473da46ed8feb5cebcacc8bb10 *R/compare.R
740450c17ce9f5f73cf026efd4e2b80c *R/drugSensitivity.R
d6c47cbd57ac36e1d31a8635aff21d6b *R/drugSetEnrichment.R
eb62efdeb93f1cf3de23008ee6df312a *R/floweRy.R
72e97913fd263afc4686ff08bd36dd6a *R/plots.R
3854ab1593bac2832b5bc81bbf2a6260 *R/shinyInterface.R
4f4d23d8824a2a0303f258b310e1c2fb *R/shinyInterface_session.R
1e33b02cb26d4ea76adc8515706f5fe7 *R/sysdata.rda
b57bc914685f9a9d6ba0888b850026ad *R/utils.R
3c3252045dac778267ec341782c6349e *README.md
fc667a4537c133f80856e38d835acf24 *data/ENCODEmetadata.rda
05420a8e44ab4f1ca47c0402ef220b74 *data/cmapMetadata.rda
cb70ed3d7e1e15be8193397c08c97894 *data/cmapPerturbationsCompounds.rda
7680e77f72f94ccd61e10d952b061cee *data/cmapPerturbationsKD.rda
75bede48b79af8225e58631a9387bca7 *data/counts.rda
6b1af7aff9d707990b62f63ae1b72573 *data/diffExprStat.rda
def867c404562454e995f42870cc99af *inst/WORDLIST
49f30d1d62c33e666de8b4dc3fe338c6 *inst/doc/cTRAP.R
11d7608d2c3758153d643bf994a730f2 *inst/doc/cTRAP.Rmd
e3db89920de03228e2adbe190c14c997 *inst/doc/cTRAP.html
65c921a07c25fed901a39d24f074d1c9 *inst/shiny/www/cTRAP.css
59a3d55ec7e5e86f80d5c23fd1288168 *inst/shiny/www/cTRAP.js
d14aef989713b8d4c0d3c7daec796e8f *man/ENCODEmetadata.Rd
d8d6890820de8649f4d8a974197f3258 *man/GCT-class.Rd
e5fa5721d0a979acde2dd26293e3a5eb *man/HTMLfast.Rd
5a949c97ca25d405905005941b6d2924 *man/analyseDrugSetEnrichment.Rd
138c2facff585daf7dedb84af8872d36 *man/as.table.referenceComparison.Rd
170d25ac6c87f49c7a7fb51266b54a7e *man/cTRAP.Rd
474c8c72843898c3b506056353b57902 *man/calculateCellLineMean.Rd
c5c9f8559f12f9628bb7d0e6231cf4db *man/calculateEvenlyDistributedBins.Rd
344b8a4fda6f0bf289851e628e611a40 *man/checkColnames.Rd
b4b96d3536ec10f81180180bd34e7043 *man/chunkColumns.Rd
232c8066d0fb3e1a8f61aa23b0ff6f46 *man/closeOpenHandles.Rd
aded7742a6caa9ae04f75961ab7ac2f0 *man/cmapMetadata.Rd
46c63090b4180932a80079cb132272a9 *man/cmapPerturbationsCompounds.Rd
2d958600245fd7ff0805148e38bc3240 *man/cmapPerturbationsKD.Rd
c369acec9b7e1d10b3851be71ea4308e *man/compareQuantile.Rd
be595208bf87a8a809b229145ac16f35 *man/compareWithAllMethods.Rd
f05cac33bf8389e95cc7ec667a25583b *man/convertENSEMBLtoGeneSymbols.Rd
175f925c3de07ad9b265f73ebdbdde76 *man/convertGeneIdentifiers.Rd
2507775cff29cfe17220ea40a9604849 *man/counts.Rd
eb38f78d0c30d5d086fcf633375e9e0e *man/diffExprStat.Rd
c2408be94daf0eb3821bb50e58a787a6 *man/dimnames.expressionDrugSensitivityAssociation.Rd
cc93ad5c8925cb887f009a5190a65b2d *man/dot-plotBubbles.Rd
b10183a99dc8ec02908a3d9de63a5e63 *man/dot-prepareNavPage.Rd
f0b844368e73ef48e1c19d6f720b0ec8 *man/dot-traceInList.Rd
7ed7cb4446f2e0fb355b3f1a5a658398 *man/downloadENCODEknockdownMetadata.Rd
519677a912710619c2af667eb5dd3217 *man/downloadIfNotFound.Rd
bef874ae19ff0e0858814f9bf4ada949 *man/filterCMapMetadata.Rd
6967b8ccea88dbb0da9efb3e80874e29 *man/findIntersectingCompounds.Rd
c87d210f30ef2f8cb9696f0e3606c4ea *man/fix.datatypes.Rd
274b98d9c0907d8e58d722cd2e511719 *man/getCMapConditions.Rd
c6bd44c4fffe457f514510a785dc667d *man/getCMapPerturbationTypes.Rd
5ab42e08d5e53ebd2d967f19540cf5dc *man/getENCODEcontrols.Rd
5f6a693c58e6aa0afd495e412ea06181 *man/launchCMapDataLoader.Rd
0c5b1683495122aaf75e0e2b74e23682 *man/launchDiffExprLoader.Rd
223acbf1de739e0410ba1322b0e2e84f *man/launchDrugSetEnrichmentAnalyser.Rd
da589c69d0a9524ffd557db11fcb4244 *man/launchMetadataViewer.Rd
099e73ac3fa02143837146f32c7c2c1c *man/launchResultPlotter.Rd
94616bddf9774e19903e5afc8be589b0 *man/listExpressionDrugSensitivityAssociation.Rd
bb1b9eac367bbbe99590b57e326eac82 *man/loadCMapData.Rd
9fd95a7c89ac59d3f64c66043eba672a *man/loadCMapZscores.Rd
a51f7c6533950abdeb20958a52054d87 *man/loadCTRPgeneExpression.Rd
16b55892aab412bf4369447c3933913c *man/loadDrugDescriptors.Rd
3d043f1355ac441c6c37bf7cf16cc9a6 *man/loadENCODEsample.Rd
b4cf583099b1051fb5dc003a2ceb4f3c *man/loadENCODEsamples.Rd
9de54e2ae7fb9c369a8c943eb9f9788f *man/loadExpressionDrugSensitivityAssociation.Rd
250ac2f3ed63bd746ee2f33cc2e1dc9e *man/loadNCI60drugSensitivity.Rd
7e66e05293c4da2aa3fba5f6d8b40ede *man/matchStatsWithDrugSetsID.Rd
2d73cf1b68ffe675a7d306c556ab596b *man/parseCMapID.Rd
06823199769ffede26e3a255d16de2bc *man/performDifferentialExpression.Rd
d0a38f860483effc256629cf600ecc16 *man/performGSEA.Rd
d1943c4a8f139fefb076deb79f21c116 *man/plot.perturbationChanges.Rd
0c2f2375da76fd2ec5a07844a79f6c12 *man/plot.referenceComparison.Rd
f5901247b9db3b883fe464aaf928a782 *man/plotDrugSetEnrichment.Rd
e5d9b659f4458bf2a5004ec791f618d5 *man/plotESplot.Rd
122a74ab2b4a8c6fa70265a53f9eb9b7 *man/plotGSEA.Rd
81722790b7f08dbf2d082bee170bb298 *man/plotMetricDistribution.Rd
caf505bc53668cf493d84be0ecbe3503 *man/plotSingleCorr.Rd
0151fdf02a6884bb9dab8ebb4fd22d5a *man/plotTargetingDrugsVSsimilarPerturbations.Rd
1699f4010e6dc4e5f4d819f353b99931 *man/predictTargetingDrugs.Rd
9f9bd9bc4c245ed51ad7318ac8270252 *man/prepareCMapPerturbations.Rd
2c89038cdc5211e867e051a41455556f *man/prepareDrugSets.Rd
a42081d37963a49c4c12a40a9c9bcc13 *man/prepareENCODEgeneExpression.Rd
b81b0eab2434de672fd2e25c3e042c18 *man/prepareExpressionDrugSensitivityAssociation.Rd
d5001f94e7ef572f70e148aad73031e5 *man/prepareGSEAgenesets.Rd
d099385272de41b516c9ae8c967b0e93 *man/prepareSetsCompoundInfo.Rd
c35039b5358185e5eb9caa8fbc0a31e3 *man/prepareStatsCompoundInfo.Rd
2b41eb2b854ff6e5b99941601e9f3aaf *man/prepareWordBreak.Rd
075396f544799182968d394525968fbf *man/print.similarPerturbations.Rd
b9a4f8d71b8975dadc6bfba7eb66759c *man/processByChunks.Rd
29f67b156e32db9dbf731759709c7124 *man/processIds.Rd
4b9078e859de4c65e785116feb317713 *man/rankAgainstReference.Rd
e1a54d70d5c7b3caabff30da356ba340 *man/rankColumns.Rd
b814bf4bb9ac9194b00a4ae9205de1b6 *man/rankSimilarPerturbations.Rd
a88670e147ddacf32ba6e48ed894818d *man/readGctxIds.Rd
3260526a6b6ab2d242a70defe5a692dc *man/readGctxMeta.Rd
27c0b434fb466a4bbf3b23e5216fdeed *man/stripStr.Rd
e6d8cd3098a823421ba5e67cfb4ac322 *man/subsetData.Rd
095899ea479782045f1698cefb827c2c *man/subsetDim.Rd
776a7b048880584657d106e56fe2fbf1 *man/subsetToIds.Rd
0622a97a2aaa3c342f09636052c2d7f5 *tests/spelling.R
938e078d36a0f0318cbd9e9b4d269e5b *tests/testthat.R
5ab7a6216192517075efb97939b14012 *tests/testthat/test_CMap.R
612e4b646ea218ff4c9b9ccfa3a73e69 *tests/testthat/test_ENCODE.R
70b120bbab2698b0490a67b9e835cf72 *tests/testthat/test_drugSensitivity.R
bd3b4dbfc88f2cf1876e68719ed03bed *tests/testthat/test_drugSetEnrichment.R
a8d173b96cf6ae0a4dff617f3189052d *tests/testthat/test_plots.R
11d7608d2c3758153d643bf994a730f2 *vignettes/cTRAP.Rmd
