862a644b2e8ef53b3401605eff08d98d *DESCRIPTION
b47414c43a0a0388daa04b8f9ffa6938 *NAMESPACE
8ff53345c7ef55816d17ef54cd313e51 *R/FastQCShortRead_Functions.R
f7670ed19f75649bbd35b9d8942a3fd8 *R/allClasses.R
f0fc039f1cb5690cd0d13ef78158db44 *R/allMethods.R
d688526eca9fc8038e8811ac866e5519 *R/plots.R
dd0457add24f40c66d539f1b9e882da9 *R/processExternalFormats_Functions.R
6a63f0c754b245218bf852f5c98a02d1 *R/processIlluminaSamplesheets_Functions.R
ae43b170685f30224ed7bf1588cb9b42 *R/processInterOps_Functions.R
f3bc47e1944239a31c0d8e690248a1af *R/processXMLs_Functions.R
ae3bf133602e4509f9510c5c4eebb26d *R/reporting.R
d918f04a7f5a99c48d67a95aaa7508a8 *R/tables.R
bbafe2ed7d172c172a74be57a227e3d6 *README.md
b27c600f5c74b9f79a96b5e0c3d593b4 *build/vignette.rds
bc4870dc68b78e20c6c9bbef73d139c1 *inst/NEWS.Rd
fc8e6ee1701faa201b34bf595a740a69 *inst/doc/basecallQC.R
5866ff061f939f5eb2fa184ea7ef8798 *inst/doc/basecallQC.Rmd
9a72ab2e61ec2bcf4940b7fe1311ea74 *inst/doc/basecallQC.html
6336364a2a20638f5fffd04e0c298ea9 *inst/extdata/AdapterTrimming.txt
542bd776dc0c7647f09f19e2ba0dc1bb *inst/extdata/ConversionStats.xml
93eebe0809fc26e3a0a3ba63d3352294 *inst/extdata/DemultiplexingStats.xml
f5a9a76cc8cd0f6d01ffd01163b20845 *inst/extdata/DemuxSummaryF1L1.txt
0c199829b391cd374e54abef1f81df22 *inst/extdata/FastqSummaryF1L1.txt
0e1f118bb73f31ad7a6e899bb0949161 *inst/extdata/Runs/161105_D00467_0205_AC9L0AANXX/C9L0AANXX.csv
6336364a2a20638f5fffd04e0c298ea9 *inst/extdata/Runs/161105_D00467_0205_AC9L0AANXX/C9L0AANXX/Stats/AdapterTrimming.txt
542bd776dc0c7647f09f19e2ba0dc1bb *inst/extdata/Runs/161105_D00467_0205_AC9L0AANXX/C9L0AANXX/Stats/ConversionStats.xml
93eebe0809fc26e3a0a3ba63d3352294 *inst/extdata/Runs/161105_D00467_0205_AC9L0AANXX/C9L0AANXX/Stats/DemultiplexingStats.xml
f5a9a76cc8cd0f6d01ffd01163b20845 *inst/extdata/Runs/161105_D00467_0205_AC9L0AANXX/C9L0AANXX/Stats/DemuxSummaryF1L1.txt
0c199829b391cd374e54abef1f81df22 *inst/extdata/Runs/161105_D00467_0205_AC9L0AANXX/C9L0AANXX/Stats/FastqSummaryF1L1.txt
d04c4da865669db3eae06217743e232f *inst/extdata/Runs/161105_D00467_0205_AC9L0AANXX/runParameters.xml
37f36a692f981a765ae7eb5b62d8d719 *inst/extdata/Runs/170217_D00467_0227_ACADN3ANXX/CADN3ANXX.csv
a0f4e3aab85d72a82f3421f12ab73eae *inst/extdata/Runs/170217_D00467_0227_ACADN3ANXX/runParameters.xml
bf1351b436fa9f9bf1b76f230dedff4a *inst/extdata/Runs/170222_D00467_0228_ACAL6PANXX/CAL6PANXX.csv
0a413032c51f9583ed4dcaf86133cc24 *inst/extdata/Runs/170222_D00467_0228_ACAL6PANXX/runParameters.xml
d4ba831a6a0c8072d98381f48bd7744c *inst/extdata/Runs/170303_D00467_0230_BCA7RDANXX/CAL7DANXX.csv
96fad9487707390440fa104f071395ec *inst/extdata/Runs/170303_D00467_0230_BCA7RDANXX/runParameters.xml
6b405eb7feffade7a9b0c9fcfc14edda *inst/extdata/Runs/170303_D00467_0231_ACAK02ANXX/CAK02ANXX.csv
039895aac7715c34c54738c7a0e1af89 *inst/extdata/Runs/170303_D00467_0231_ACAK02ANXX/runParameters.xml
5bddeff1d75b1fd9cd38d66bcf34512b *inst/extdata/config.ini
b5a3525c9c64b49d5edc6bc3c398d100 *inst/extdata/reportRMDs/basecallqcreport.Rmd
24928d32dad23d207aff6cf8f7b9c081 *inst/extdata/runParameters.xml
2ab78425db019502aaf4fb4ba450b13d *inst/extdata/testSS.csv
611b5df36465c222895ad15105d89171 *inst/extdata/testSampleSheets/ErroneousNewSamplesheet.csv
b602a842b12cb03a777b34fd61331278 *inst/extdata/testSampleSheets/OldSamplesheet.csv
b056b15b5ba16521a1bc3aefd1c4e442 *inst/extdata/testSampleSheets/runParameters.xml
b2400c0890187f4ea40d05864e973507 *man/BCL2FastQparams.Rd
1938785907ba08dd086058c775c6e585 *man/baseCallMetrics.Rd
ffd68b3d9d2f32c87c22b527cc17f567 *man/basecallQC.Rd
9a2c0df1d0142c79511b8da838430514 *man/createBCLcommand.Rd
4d168df93d6b3cd5ac36c3f02c737a9c *man/createBasemasks.Rd
5f6baa2fb7a7fbce8253a53a8c60fb12 *man/demultiplexMetrics.Rd
c8aeef235bc7ab360c82e2164ca8aabc *man/demuxBarplot.Rd
f0fff6f05111a0a953b40e6f707cd3b0 *man/demuxBoxplot.Rd
6576ca0f09d93f21a3ad1c065ce51196 *man/indexlengths.Rd
c3960837d38c9aea8bfff7f8a4386855 *man/interOpsReport.Rd
6094338c76fcf30f7d0baac36772cbe8 *man/makeFQTable.Rd
0e22402e19a9cea6bdda4e080da1f5c3 *man/passFilterBar.Rd
fc9a9204af8faac92ca1056eed07ba59 *man/passFilterBoxplot.Rd
81a19aff33c4963ecd544b6c73aa81de *man/passFilterTileplot.Rd
2698a4902a84b139f542f3e65151afd9 *man/readlengths.Rd
8a9a36ab2953a386cfb461ae92d32de5 *man/reportBCL.Rd
fa05238f6ca04c8b5737b9627aaf54ad *man/summaryConvStatsTable.Rd
7a55e405f2fc80ccd614531b053a0cf3 *man/summaryDemuxTable.Rd
df1faa452bb5163959148d815dead530 *man/validateBCLSheet.Rd
6d918584abf4b6b4c0cc54774ef33424 *tests/testthat.R
0e23bbd569caeb32b659ce6546161b24 *tests/testthat/C9L0AANXX.csv
414d14731471780328b8f1ff9cae79cb *tests/testthat/CA7RDANXX.csv
4a96371b121df95ff0a41c62a133e8fc *tests/testthat/CADN3ANXX.csv
8532cb8b4d795882ce8aa1c5022a29a3 *tests/testthat/CAK02ANXX.csv
57b9eb8c179dca0bd4ee1605a9b202e1 *tests/testthat/CAL6PANXX.csv
e3cc587c275914b472953fd2ee007efa *tests/testthat/test_Run1.R
d226befd8650f8060b4c0bc290a93a73 *tests/testthat/test_Run2.R
eb329eba1f263001fbc78d28d6fed889 *tests/testthat/test_Run3.R
931be07cd03c43aa9dc9aef98a0bd067 *tests/testthat/test_Run4.R
abb71aa1c50f755055ee7f9cbcfab51a *tests/testthat/test_Run5.R
5866ff061f939f5eb2fa184ea7ef8798 *vignettes/basecallQC.Rmd
0a8aaf1591588ea3fedd47ae28b88dbb *vignettes/imgs/inputDir.jpg
ba27e8d89ea2b42553eac42016bd710b *vignettes/imgs/outputDir.jpg
