f7ec8a752258a3b0526977f55f7f8e75 *DESCRIPTION
e5bd6134a8054b0a5825318ffab88917 *NAMESPACE
a8f87c29676fb1a7f2125498597e1645 *NEWS
8917df843205b4f12580d2b02ad9fc39 *R/AllClasses.R
4eb8331fdea7de956475c83e96cc7b3b *R/AllGenerics.R
dd88d7d7544cb2b35fb1aef5ff8de1a4 *R/ERVmap.R
3b18795d0509d84bcbd6392e5700c283 *R/TEtranscripts.R
1bf3895300bbb94512e43cccbb932a3b *R/Telescope.R
8981a39b81c12596d97960b6863883cb *R/annotations.R
951610c185e28d564aa5ba460bcba298 *R/atena.R
b0877972c8083d42ece3ec117e366884 *R/atenaMethod.R
1f918bc275de79b74e6b09de9a0c600b *R/overlappingModes.R
14656e2ffdac3368ab9c1bf55537c8ad *R/qtex.R
7547c2f70a17b870776283df71d29b67 *R/utils.R
9c6efd7ddf2d97709f75552290099051 *R/zzz.R
45daceb48ea15ca3d246e3a4fcc4e2e1 *README.md
991a0101960d431dbc06041e63ab2c0a *build/vignette.rds
aec017559db033d6b63c219bb4c59494 *inst/doc/atena.R
bd04bc7cb30c61bff34671dd79d0b3c7 *inst/doc/atena.Rmd
976c5525b704805f49f7ef332305abfc *inst/doc/atena.html
4528138a9b9b30e4b67f993bb6074703 *inst/extdata/Top28TEs.rds
8475c255a4c1c88719a63dd4cbd19475 *inst/extdata/Top50genes.rds
ddd97b5902a39d3d3f2c59259fa82b21 *inst/extdata/control_KD.bai
6d52490558b48b042a5b818746a84f11 *inst/extdata/control_KD.bam
12a475cc121677a0f6a565ebfd79eed9 *inst/extdata/piwi_KD.bai
2b7b2e197b632e8d3af627756ed5e612 *inst/extdata/piwi_KD.bam
c48a428bd5c940b1aad3e9d29af0df10 *inst/extdata/rmskatLTRrlen80flenpartoth.rds
e846882860855dd863e1b6234d86221f *inst/scripts/create-data_OhtaniSaito13.Rmd
d16135ecd0f6328f6351526e81a92773 *inst/unitTests/test_ERVmap.R
713e9f161cc16dce4216f9534b8d6cf7 *inst/unitTests/test_TEtranscripts.R
0e7d1c6a62015a3b06d91923ee1c4a54 *inst/unitTests/test_Telescope.R
88fcab1566331698ebcaab265ef89189 *inst/unitTests/test_new_TEtranscript_functions.R
84a9efaae12e3970f8cb17c3fd8ce364 *inst/unitTests/test_new_Telescope_functions.R
a25ae200180b224bd94ecb0f225ecb3d *man/ERVmapParam-class.Rd
b3cca08cbc2bdd9b999c5f8f8e625c8a *man/OneCodeToFindThemAll.Rd
b4f54cc590facb59e1f512be9a75edc1 *man/QuantifyParam-class.Rd
aff4bcbd0a33bffdba14d9c8891466f9 *man/TEtranscriptsParam-class.Rd
a95a7304af3edf2baa2722ea4ee482e3 *man/TelescopeParam-class.Rd
a8bee3529995563181cc6dc35897acfd *man/annotaTEs.Rd
c0fd931462ace07484612e4473cd01b9 *man/annotaTEsGetters.Rd
7ab898d8fd357d83a90c162284d9cfd2 *man/atena-package.Rd
66fdddc2fe076dd3886a399247afbbbf *man/atenaParam-class.Rd
85d313d58541032497fb269b7ee013ea *man/ovFunctions.Rd
c0e01a72d9a7880cc440d302a2bee7a2 *man/qtex.Rd
0f2bc73dbb5a2da66034b370657a5df4 *man/rmskatenaparser.Rd
c62351475719cee2f962e4ef864396ef *man/rmskbasicparser.Rd
cd6bd4a9dc629db93dea333def8bb108 *man/rmskidentity.Rd
1e42d7056802f416e381f254c8014bb6 *tests/runTests.R
bd04bc7cb30c61bff34671dd79d0b3c7 *vignettes/atena.Rmd
b99e74cbdf1b3c84c4de45aa30dfff07 *vignettes/bibliography.bib
