ebe210f3338413b38ad2d079603d45c4 *DESCRIPTION
77c823b77912d62f838f858dae503e49 *NAMESPACE
05126bcaf9a3ed0bb854b5e7b99cc3c0 *R/alpha_div_boxplot.R
55aa9d12073425c7737ed26035b5c5e3 *R/alpha_div_test.R
e6c79185da988a2215e7ac5d924565dc *R/animalcules-package.R
78ce8c13be655c6f4c7473991cd5ecca *R/differential_abundance.R
692e76acb658b264efcdd481e99dfe71 *R/dimred_pca.R
a71b3ca074fc80c4c0581650d537e3e4 *R/dimred_pcoa.R
7e4c79184eb26fef643cf256e6e89917 *R/dimred_tsne.R
6f0b5e9bcd5aa9598068801c882e1a57 *R/dimred_umap.R
2f47cd246f7510eded0c86d81753cfe1 *R/diversities.R
ca316cb6e1f669cc77f8c92d57d99252 *R/diversities_help.R
570e3e2b0924cd29912eea07d35192bb *R/diversity_beta_NMDS.R
b51f9f25961199ddaac410f3541fcff3 *R/diversity_beta_boxplot.R
ae17a0ad11d649b84fb81d17a74034f5 *R/diversity_beta_heatmap.R
24ecc09dab94136f44149031e1a6b5f1 *R/diversity_beta_test.R
3ab00b9c5e924c5de5591d6952fd68b0 *R/do_alpha_div_test.R
a274d97c9f40f257cbae5746dd960f9e *R/filter_categorize.R
1e67d54c55b59e13f724e8b615b17820 *R/filter_summary_bar_density.R
8b47d42f6b4c7b5b47309f741ff8fd82 *R/filter_summary_pie_box.R
9bbc7a16ff8a42119369c2bf1176cfe6 *R/find_biomarker.R
1b13602df4180234f2a8c5ea8f530e6c *R/find_taxon_mat.R
5e35497256fb02f921b7d7cf4f83564b *R/find_taxonomy.R
46dec5459e360c1e1a619bd449a5f530 *R/find_taxonomy_300.R
0117769271f8acb5d8960341a273d80c *R/gini_simpson.R
b21cf7aebb053302e53cb5574eca777a *R/grep_tid.R
034597d722d58141b29bd66fbd014e5b *R/inverse_simpson.R
9111cf93f4529be84cb537f559358378 *R/read_pathoscope_data.R
b64a506b7088b4aa6b583968240a18f1 *R/relabu_barplot.R
86f50e5cae9dc7d8690a73a1f701f23d *R/relabu_boxplot.R
f09b2f990713e32946156ae44a7faa9d *R/relabu_heatmap.R
bf54a3abb30854573de58bebb481f5fc *R/runApp.R
737360420382d4898d4e22bd8984c735 *R/shannon.R
21a8934dec654cafd08e8039f40eed93 *R/simpson_index.R
2ca043e60d4b21db86b85aa16508c321 *R/utils.R
e5e65debeb9054a4822c38821b0ffcb8 *R/write_to_biom.R
6064eebd7b26d919530930a6d6d20c5f *README.md
a1b3e72f338f81a687f959d7bf7f701e *build/vignette.rds
55251ddbf1e68e37b0c80c4a4276bd62 *inst/CITATION
c7ad4d8741314cbc804c9643cb938556 *inst/doc/animalcules.R
e4024294643e190d2613044d95d07e84 *inst/doc/animalcules.Rmd
d82195f22c6387eda28d5533dc567b64 *inst/doc/animalcules.html
6646286b0281d2a19a516814ba1f69ca *inst/extdata/MAE.rds
b88a7dabf96e4c8ee6f95353a26340f4 *inst/extdata/TB_example_dataset.rds
b9302ff035b7fdd5a00a3082b71c885f *inst/extdata/animalcules.rds
5ccf10dad3bf9bd41ee90fdc4d319d8b *inst/extdata/asthma_example_dataset.rds
89f9613c50814c094684841090b5368e *inst/extdata/biom_example.rds
8519a804982779b7222ada45f0daf739 *inst/extdata/toy_data.rds
49466045cfa402bc0bd829bf337ce9aa *inst/script/extdata.R
e9f82c97bb52ef5b35b9e044dcc9f33f *inst/shiny/app.R
9077734c88285a8dabba967342e1acb2 *inst/shiny/server/server_01_upload.R
3588c7dae3af10aa1a99a45d9d9cf3ea *inst/shiny/server/server_02_filter.R
f411a9e651d5f2740a0a2bf99ec460cb *inst/shiny/server/server_03_relabu.R
0c7e2a1ff673bf08b8fbe69b9b9b7a08 *inst/shiny/server/server_04_diversity.R
a4d3df8c98c9ea6ebd3b692752e8ee90 *inst/shiny/server/server_05_dimred.R
3e4466be5d4c63155e12152407491da9 *inst/shiny/server/server_06_differential.R
05ab314718527f8dc6d8a7b4431e79fb *inst/shiny/server/server_07_biomarker.R
79e77206f868a7b1173b9a6ef8b0555c *inst/shiny/ui/ui_01_upload.R
52f83031f25b083951387290cbc8f4a4 *inst/shiny/ui/ui_02_filter.R
fc2d3f8d9a48e6efeb73e90b29528197 *inst/shiny/ui/ui_03_relabu.R
78ca7121eb51ca5114c6f88034fe5f75 *inst/shiny/ui/ui_04_diversity.R
b5864af533131ff3f7033f8f39ffe58b *inst/shiny/ui/ui_05_dimred.R
fd6d9ca5d3d1af87d264ea0fed8b2591 *inst/shiny/ui/ui_06_differential.R
7110a8f8f0d0bee9a3ab068ac8fb5740 *inst/shiny/ui/ui_07_biomarker.R
4f15876e761b3a43e9e285b39633b731 *inst/shiny/utils/helpers.R
ff4c8ff01d544500ea4bfea43e6108c1 *inst/shiny/utils/server_util.R
575227c0df02775ad378bccb43ebdc55 *inst/shiny/utils/ui_util.R
4889784689c1b8109f97a0eecf9265f4 *inst/shiny/www/ajax-loader-bar.gif
61b10811b98fa5085f478fc83178d8c8 *inst/shiny/www/animalcules_logo.png
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34e4ff2b9f9d6569cdfc07359979876c *inst/shiny/www/bu_logo.PNG
ededf5bcdfd75fce9a40ec72fe899bcb *inst/shiny/www/cbm.PNG
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1c0b1768c7ba7b2270b9e159adfb5ed2 *inst/shiny/www/footer.html
e0bba2f468cc6508b71f35b822c4d480 *man/alpha_div_boxplot.Rd
6f85f80134174f26f6e1d6691e70d620 *man/alpha_div_test.Rd
062b20a20bcdfbe9413f6711867692f4 *man/animalcules-package.Rd
60d47f62ca28d95bc20718e0a6fc7465 *man/counts_to_logcpm.Rd
c3bf137781085921fa73d846adb7e2b5 *man/counts_to_relabu.Rd
2d82bbe748899c6dcb9114320b887100 *man/df_char_to_factor.Rd
0da64fd915eab027f14eca4c9eee674a *man/differential_abundance.Rd
708f3d2520ddbe03d406896bd94df94a *man/dimred_pca.Rd
17a19385c00d740f140111fdc63003ab *man/dimred_pcoa.Rd
66262452516a9bb0fd9c2e965b487801 *man/dimred_tsne.Rd
7bca1a788ca952ef72156c99ae5a8725 *man/dimred_umap.Rd
07f3260c4e72b3195510f1616e6a3aed *man/diversities.Rd
03a729e93ffd61977fc1e8c41c32bb44 *man/diversities_help.Rd
7e8b8c60e82bb1d57ce7daa0bc27c978 *man/diversity_beta_NMDS.Rd
288bc2db238f8656115a1dc00af6b6e0 *man/diversity_beta_boxplot.Rd
7061e99b6768f9082cb14de69b3dca41 *man/diversity_beta_heatmap.Rd
f367ee773e307e3d6967d721c8fd9120 *man/diversity_beta_test.Rd
4b0265f12d7a7300c561a5b2badf10ce *man/do_alpha_div_test.Rd
a01b9c264a51dc92eff320d50c06812f *man/filter_categorize.Rd
53fc6d178116ad8d4461f1841d979c9b *man/filter_summary_bar_density.Rd
dc9684735b83e7a9d49b50bc66f20d37 *man/filter_summary_pie_box.Rd
10288279b5c426199d73117ed6e032ab *man/find_biomarker.Rd
723522b29ce812bcbb8d6bc58cab345d *man/find_taxon_mat.Rd
99f5bf4cb18dead511efde4fdb39b701 *man/find_taxonomy.Rd
b176880c785448f50c775bb6025d366a *man/find_taxonomy_300.Rd
9be6c82c36098ddedf1c29fe3053c280 *man/gini_simpson.Rd
552a0e2e6e7d5e16befa68e1f653cc6b *man/grep_tid.Rd
e524e84ded797b778c09be6d0ea4098c *man/inverse_simpson.Rd
8911270c4374e5210d0707112874e383 *man/is_categorical.Rd
e0985a9a63532a6e55aae712534f7e20 *man/is_integer0.Rd
1a07e944adc290b53feb5e34dab9e7ab *man/is_integer1.Rd
01f904a347c8730d2a6798df4bf4dec4 *man/mae_pick_organisms.Rd
166c3e91d1d399a8516f110e2477c437 *man/mae_pick_samples.Rd
dca39a0124b96b3bba661c0f6d2ee720 *man/pct2str.Rd
bce18ce11649025976097628752d5f72 *man/percent.Rd
d6081f1ee6052644e42aa6be011d3500 *man/read_pathoscope_data.Rd
8724fd8d9ce565a97d4f5b673552091e *man/relabu_barplot.Rd
452816a4e434b72d76ace480c5000a2c *man/relabu_boxplot.Rd
12d92e3893673e684b4ebe53c25f8245 *man/relabu_heatmap.Rd
5ecdae7c9c14fabef39ef6bd29535666 *man/run_animalcules.Rd
9a4cf0c67bac7e40e9b7182de00bef71 *man/shannon.Rd
b1a266537e1b0d9c2cb8a0e1d885a947 *man/simpson_index.Rd
99384489b4907b53ef26d1b526955c2b *man/upsample_counts.Rd
abd694d24897e5df0275c64fe10e7ff8 *man/write_to_biom.Rd
e967a1c4f5e215d3294dcb5dd78ce6c2 *tests/testthat.R
2a41bedf02270223a38905b9490f2874 *tests/testthat/test-examples.R
e4024294643e190d2613044d95d07e84 *vignettes/animalcules.Rmd
