9b6d73161cb544d0829157484823c7e5 *DESCRIPTION
8b5e3037b6db107e78d91cf0715437fb *NAMESPACE
8b302225673e9a47484648a2252433bf *NEWS
070c28ce6fe355baa903723f9a1a6884 *R/AffyBatch.R
0334cde0c9597bf58339e1040df122e1 *R/AffyRNAdeg.R
1e34cef3ee0cfa288eb50ce36296cddb *R/ProbeSet.R
75afbc07f49617854f85957502e84542 *R/ProgressBarText.R
84e01d934f54386ee3e16579331cecd8 *R/avdiff.R
86b21a2412a47119d1b5c662715746df *R/barplot.ProbeSet.R
86645a209b53341e168858e4df6f322c *R/bg.Affy.chipwide.R
69903894b0f4ba096e88bb2ea9aa3900 *R/bg.R
9633394d4855c85bf4457ecdc127bec4 *R/expresso.R
6000f929caa9f84891296b48f4cf2d43 *R/expressoWidget.R
7c57e2223d9c30295e8181a4b409fa15 *R/fit.li.wong.R
991e0028ee122aa84bd2cc139f417c4c *R/generateExprVal.method.avgdiff.R
8e0ddf6f4c7a9f45a4edbd57bb10e336 *R/generateExprVal.method.liwong.R
e7d5f4b3a24dbf928a08ea3ecb4482f5 *R/generateExprVal.method.mas.R
58bc927387b56558006b6b8e9b9f15aa *R/generateExprVal.method.medianpolish.R
6494490d3ec4caa07bf1ae9411f13fe9 *R/generateExprVal.method.playerout.R
fcabdc74d88796a93efc73501f8e00f3 *R/getCDFenv.R
a97343ecf34a0c695dc1508dcf7e95ec *R/hlog.R
21220a993da63a15bf2141ca8a4dc24e *R/justrma.R
5bb59d92cc8b7764addc2d8ce19c80d9 *R/loess.normalize.R
4062a189ef820c2aedfa19b62f06a5c7 *R/maffy.R
e3417071175b0f879d11f049808d498a *R/mas5.R
1e1bc9a16c57a55948e00dced1ca13ad *R/merge.AffyBatch.R
343f38efc817b7fe7958f790f5217a52 *R/mva.pairs.R
a1581f97bf9a9c98cd807624f15c39cc *R/normalize.constant.R
6e92431caa1f6622e45db88a4a8b98f5 *R/normalize.contrasts.R
6af38ad9c6ba21335473898db67be0a2 *R/normalize.invariantset.R
570dc63a32c5cfa7ba1a72721875bbb4 *R/normalize.loess.R
4f53b0370608ea01bc0a391332b40c49 *R/normalize.qspline.R
730d7fb54740c85cf23d3356b767377b *R/normalize.quantiles.R
1745f88af5da0e81926e9548658a44d0 *R/pairs.AffyBatch.R
d9b8cfffd49fdd53e119a446d6258e0e *R/plot.ProbeSet.R
304ff93f0797af8e74d66d73c773d5fa *R/plot.density.R
c25e9df921c693a5f8c2c1dbfed4e1c7 *R/plotLocation.R
9fddd5ea4b46aaf3689eb7bda672b30f *R/pmcorrect.mas.R
d0ebcd4a00b350e08b23a0cde56c0ffc *R/ppset.ttest.R
e748aa1b8986ab33b04fad872da69938 *R/ppsetApply.R
615a24b691fa8136e35e087c6908931c *R/read.affybatch.R
6f5497160b879d511c5e3bf25d818d03 *R/rma.R
a61b711740a87955aadc2a8c87a007d1 *R/summary.R
98ffa171b42281acf9c9011804e60117 *R/tukey.biweight.R
d62dc3f908fb10e595ea8d298b734b91 *R/whatcdf.R
a6255dd06ecec9a6b0143e1b6d4037e2 *R/xy2indices.R
17ab84f133f9243b2fab5feb3f54aa1e *R/zzz.R
3ea9d3b1261438691611357da98e0034 *README.md
abeb9de2b49712d03717420da49d6a07 *aclocal.m4
cbaffe143c035f4c9c2fe5c2630c30c5 *build/vignette.rds
4d5d1d9e86fee7f5bdc81370a418a979 *changelog
763d76d03c222874a8084d847ecc835f *cleanup
1d6167a77c56a8817c02360555c3ba2e *configure
694f8cb2cea59b4012f22bdf486e2143 *configure.in
b6d037f3e75a2239f732061dc270f4e9 *data/SpikeIn.rda
a54dd058aa2082b8be22f4039031d02a *data/cdfenv.example.rda
90670c4125be13a9941d6a7cb55599e3 *data/mapCdfName.rda
e519c08248c6b5f11b3a517d39429769 *demo/00Index
2b7ad15bac320f607b433f256d9ff06f *demo/affy.tour.R
c3f94566b0951a39aac9aa91cf316724 *inst/CITATION
81d74906df8e2d6fa228d9b90e42c363 *inst/doc/affy.R
d1829fbd816625e0f1599f6590121344 *inst/doc/affy.Rnw
6b25bad14bdfc710f837e57760996251 *inst/doc/affy.pdf
4a7b9c144e68788240986d9f2b42ce9b *inst/doc/builtinMethods.R
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d0ee5b280a11cb651b8575edf967a3f4 *inst/doc/builtinMethods.pdf
65435e477c3c62640472eb2524ca9afa *inst/doc/customMethods.R
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69c54eead2be2e34cf8e6a2036df18cd *inst/doc/customMethods.pdf
d5d29eb83b25fdb651734ea20b40a46e *inst/doc/vim.R
014d1363e486e5a63fc13e173a218a5c *inst/doc/vim.Rnw
50debf39a2cdb1871f55541731008eaf *inst/doc/vim.pdf
1d80aff5790a51668cd931beaba9f94c *inst/tests/affybatch.R
c9cc934120a959d16bc53572904de476 *inst/tests/bg.correct.R
976fe73df407facb3071d1a02825b969 *inst/tests/expression.values.R
cee66e6a3b8acc98f1cc88c3addb0c32 *inst/tests/normalize.methods.R
d1534330b5f9b72b811677104efb610e *man/AffyBatch-class.Rd
1bfb284b16c44b60f18905b9bc2f73a5 *man/AffyRNAdeg.Rd
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fc9d9830abef2564ac4dfa7c76283f83 *man/ProbeSet-class.Rd
405313c3dffce2ee10f4847834e20c98 *man/ProgressBarText-class.Rd
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d566f94347fe0fa1b73787e2e1496bb4 *man/affy-deprecated.Rd
8ff2e5519e9470ba4178c05ef76ec272 *man/affy-options.Rd
0876c61f7e8bfe99b3363b281f0b6a88 *man/affy.scalevalue.exprSet.Rd
c720dec86ae7096d126c2f2937da7003 *man/barplot.ProbeSet.Rd
ca6249d86a8424a697b12e2ec2b8f43d *man/bg.adjust.Rd
06e833370fa567ff50df3d412a3df173 *man/bgc.Rd
5dedd9727ca49fd1130fbc8ac414291b *man/cdfFromBioC.Rd
e2f1140f25d030e472d5ae8615b4a9cb *man/cdfenv.example.Rd
f4f36f2386cfda69800567a390dbddd6 *man/cleancdfname.Rd
60ee5037c0fea5d91564924617e6cd38 *man/debug.affy123.Rd
57c527aa78401717acb953ead8a4ab45 *man/expresso.Rd
f9e6770e3b9241eaf04fb005c7e08400 *man/expressoWidget.Rd
78b0d41cc173aca50b989f5bb2544edf *man/fit.li.wong.Rd
47b5b3dbef27e0ebfed64ea10fb4c330 *man/generateExprSet-methods.Rd
b96d2afd44960a978590d7950cfd2a3f *man/generateExprVal-methods.Rd
fa2ae84cca7ce90cdd4a2bf7824024c3 *man/generateExprVal.method.avgdiff.Rd
015d5742ed18f046b9a96704508b1cb0 *man/generateExprVal.method.playerout.Rd
f9d17d50812500acbe4dea3a5963addb *man/hlog.Rd
d7543823e1c73a4b8c6c00e929c18d2d *man/justrma.Rd
9178f3662abb58216d554cc943b21575 *man/list.celfiles.Rd
0b86ecbfc4ca3f739fd659c0b532248b *man/maffy.subset.Rd
0ebe26dcc80ff3c78c81a4115850079c *man/mas5.Rd
9dd82406c4bae43a41a657e594acb54c *man/mas5calls.Rd
e0b41fed0c1666a09dbc80cb29eacf95 *man/merge.AffyBatch.Rd
6cba2a32a9481320bb2792ef8ab60b1e *man/mva.pairs.Rd
49df698566b50fd574606cd1f22a6472 *man/normalize-methods.Rd
d62312c4e44e2681f0d38e5811a79b45 *man/normalize.constant.Rd
802315ced6a83d9d6fb98f25c5d81e03 *man/normalize.contrast.Rd
40753751f011fed5aa74a432eba627f2 *man/normalize.invariantset.Rd
16512a6132f330f781693060084c934a *man/normalize.loess.Rd
3a7d8f7384b88e635e74ebb9b176fa77 *man/normalize.qspline.Rd
07209fcf271558014db58b52e2ac3ba5 *man/normalize.quantiles.Rd
82d5d5a791ee01318d4756053d5543de *man/normalize.quantiles.robust.Rd
0857bb2875b83da75cce4568b6da383e *man/pairs.AffyBatch.Rd
a727f57d89370a6083702208710a8c11 *man/plot.ProbeSet.Rd
001eea95ca63540aa3ee367ca16ff18e *man/plot.density.Rd
6a2bb5aec50f831f51e6948c9b0f1072 *man/plotLocation.Rd
589c26cd7526df5b1504ec2f216386ef *man/pmcorrect.Rd
004c35841fadc308ff6f95d867ad0468 *man/ppsetApply.Rd
7e9dbf1ad38a9a4a02db2cdae004c10d *man/probeMatch-methods.Rd
680f7dd8575ccc65b6841f90886d7ef6 *man/probeNames-methods.Rd
64a5bb7a44c365d8da77086ae4fa3dc8 *man/read.affybatch.Rd
f690e020192ae5b137340b462587bfb1 *man/read.probematrix.Rd
78e619b246027b0bece9506fba74acec *man/rma.Rd
e05881faf138b7eebf35eaf23d2730af *man/setAffyOptions.Rd
ec74b0d17c6d84b9bdd386f55cba6d4c *man/summary.Rd
917e7f409ebfdbb114a48ec729d467a3 *man/tukey.biweight.Rd
7be2589bc05ab3412777316c35cbcf81 *man/whatcdf.Rd
34715a4586f0f1d342050e343095557d *man/xy2indices.Rd
d9358be4b7f002294ef05476ce5f551f *src/Makevars.in
d04e8f04ac22acad01d06c7fbcd25aae *src/Makevars.win
e56e9878b1ba4c2303617d6392afcc6e *src/chipbackground.c
df0c0b8c1c9d1dcf6d308dfa22331303 *src/getall_locations.c
5a0ca8aa0c31ee8ddc901aff29f8b062 *src/mas5calls.c
07ba44b1932dbb01ac80469fed79a826 *src/rma2.c
560379da720c31d10166029bf912721d *src/rma_common.c
29aa92807b22bb271676c54a99076b97 *src/rma_common.h
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