8f14a1e30451018af87e01a401543425 *DESCRIPTION
b7e90cc3ab1409922aab33a9af170b0f *NAMESPACE
fdf640c7e532822dc7408c065a6cbc07 *NEWS
10dfcbd05d5a6bd0399131abd77448c2 *R/AllClasses.R
60abdf3c79e7f469c842ff93356f2ff8 *R/AllGeneric.R
7f159419da01e39790399e29a4164205 *R/AllUtilities.R
3c560dc4fef479b4a7fa5ff7c532342d *R/annotationEngine.R
55865dd8dbc97c438896faceae0f387b *R/autosomalDominant.R
8dcdd5c144987fb3528484f002dd064b *R/autosomalRecessiveHeterozygous.R
9bea80bb131b447e5dff58c28ea7620d *R/autosomalRecessiveHomozygous.R
3cf5aebb7d9bddc04fc0b76488458418 *R/deNovo.R
bdc4f9bf3e757029ed6cd6e8ea95de78 *R/defaultFilters.R
85b7b9a043ad0bfbcae0ab82a98aafb0 *R/methods-CutoffsList.R
03ec9f5bf4d18b0e1e73ddfe50081444 *R/methods-GenePhyloStrataDb.R
482aa904974c14ef454cdc3ac749a6e9 *R/methods-SequenceOntology.R
0620e54248546b53e483dbde3ab650ca *R/methods-ShinyApp.R
f56ed32e280b408921d01c989cc74fe5 *R/methods-VariantFilteringParam.R
ea8bdf33647c7ab1be60392a1eba3242 *R/methods-VariantFilteringResults.R
ecb21f124080b8aa6d6c3c102e85ef7a *R/methods-VariantType-class.R
3dcc278f3e0018c7df78e78b8af83c78 *R/methods-Visualization.R
686c0d248714c0ba03a399667909ba54 *R/methods-WeightMatrix.R
c7dea7cb065257c133e61720a9623701 *R/methods-deprecated.R
5815851d578b826f23cdbfdb86a27b18 *R/methods-locateVariants.R
55b939e8a6227cc6e547bdb057262e5c *R/scoreBindingSiteVariants.R
3c25c525a141bec9ba3e480c095f8720 *R/tabPanelAbout.R
50179c4bebf4f7c2b8af68e54fba0c75 *R/unrelatedIndividuals.R
823e66182b133ac2449645152978b60c *R/xLinked.R
5813e94d9c8d03483fb710dcb248ef67 *R/zzz.R
a5aa48a7770c4338e202eeea7c4b30b8 *build/vignette.rds
c9830ffcf2d8d6691a62f488e9c618b4 *inst/CITATION
97bf8664c861ee5391c17ae38cdda4b5 *inst/doc/usingVariantFiltering.R
ee4421b7efe48b1481395981bff5861f *inst/doc/usingVariantFiltering.Rnw
e97bb1c6c348b218ca2cb4fb859fe105 *inst/doc/usingVariantFiltering.pdf
3de950fe362732307965ab4f333af532 *inst/extdata/AA_chemical_properties_HanadaGojoboriLi2006.tsv
e5690b204f5964de7d2ed204579570c9 *inst/extdata/CEUtrio.ped
e6519dd84bd67839bcafe5d8d1c02a75 *inst/extdata/CEUtrio.vcf.bgz
921dd11432ca852672d39beca7c4c8ed *inst/extdata/CEUtrio.vcf.bgz.tbi
89cb41c98790137001a6a8bf40979a18 *inst/extdata/NA12878.subset.bam
af7e6878b3170846369fb77b133d9123 *inst/extdata/NA12878.subset.bam.bai
6c740f9a56967c16c24f21629114b9b4 *inst/extdata/NA12891.subset.bam
d89f332f950ce79b2cd80bfe7394ba7b *inst/extdata/NA12891.subset.bam.bai
b5d13c22deb4eeeea49feef06c21f39a *inst/extdata/NA12892.subset.bam
15760c936f447988c3934f67ff7a4890 *inst/extdata/NA12892.subset.bam.bai
ad9c78359b33ba114b4db50a3b1d6762 *inst/extdata/README_SequenceOntology
5df3191b5530a08ba1c8c9e4b256323a *inst/extdata/README_humanGenesPhylostrata
cd257e0d3b8e11afa2d5a3855eb94af3 *inst/extdata/hsap.acceptors.hcmc10_15_1.ibn
17c6d7ae91e5cc8767ba88278b8ef94c *inst/extdata/hsap.donors.hcmc10_15_1.ibn
d08fcb77afe5ee43f2a73b11739c6311 *inst/extdata/humanCodonUsage.txt
3c5cdce45c6010bbdd914f2a998bf656 *inst/extdata/humanEnsGenePhylostrata.rda
b8178b484703d1add7c0f4434f8ec037 *inst/extdata/sequence_variant.gSOXPapril2016.rds
b9e23f9cbb3840f7378508ad4c734454 *inst/extdata/uind.rds
2f9b34cd4923e2db46b4fa919ca2f315 *inst/shinyApp/server.R
45ddc57296080820d424d02cb83400ad *inst/shinyApp/ui.R
46d3bcfbd187baf705d5b7ac0ca60f95 *inst/unitTests/test_VariantFilteringParam-methods.R
d57c1f55f1f07a4cb7947126fe7dc788 *inst/unitTests/test_inheritance-models.R
f103aa42d0bf518144f11e4d19a58f1b *inst/unitTests/test_location-methods.R
486f456fbdc40b3855d127640a9393f0 *man/GenePhylostrataDb-class.Rd
141893f6120145b72daba6247b9184fa *man/VariantFiltering-defunct.Rd
554ef4f7edd4e6f7a6ca7a63c2f9d0a9 *man/VariantFiltering-deprecated.Rd
a969b90fe14d120ebece8cbfa71187ca *man/VariantFiltering-package.Rd
944682f674cb860de4d08f632a14490f *man/VariantFilteringParam-class.Rd
240b70ffd9a9509091c3e425ef466cd6 *man/VariantFilteringResults-class.Rd
66d885c1683d10052adb629944958da3 *man/VariantType-class.Rd
d18c61ad67eb79b88696fab5fc3accf0 *man/WeightMatrix-class.Rd
f09e7cb179d4077bbe4b15151eb60929 *man/autosomalDominant.Rd
b373aadd7ff85f8d7aac31a06594e2bc *man/autosomalRecessiveHeterozygous.Rd
8ae6a4ac621d8b08e19e6c8d8bf10396 *man/autosomalRecessiveHomozygous.Rd
b1541a2c5b108ca9c75b52e3ea42a4c9 *man/deNovo.Rd
cecb408a841fdb0a113654b6bf01c998 *man/readAAradicalChangeMatrix.Rd
cefba987d404976d06f1d174b4eec14f *man/unrelatedIndividuals.Rd
0b47bbe22d389acd00ad0f8747da6af0 *man/xLinked.Rd
f1f4685a8f0afb74e19c344a86d86b22 *src/Biostrings_stubs.c
d452657819388a9c9b0aaec98330f4c8 *src/R_init_VariantFiltering.c
ddf368bb0488c9c0b315938057f692cf *src/VariantFiltering.h
5d1ad5260537735d43cc74279ec7b6d2 *src/methods-WeightMatrix.c
174e3f3227dbdb4664c9b32165ce75b4 *tests/runTests.R
2fd74b31b62f1d2a7c0ad85e7ab7d538 *vignettes/shinysnapshotVariantFiltering.jpg
ee4421b7efe48b1481395981bff5861f *vignettes/usingVariantFiltering.Rnw
