5bb60b7cbf86166896f90b8478aa8971 *DESCRIPTION
e208701326ece703ad7abf71eb1f6d70 *NAMESPACE
3292a8c5740da7b01ee007109ba50d87 *R/RcppExports.R
471802654c61c5b2b583520164dcfd11 *R/abundanceVDJ.R
a89896513e5b0c2cb44bf3d67a375a4a *R/barVDJ.R
f405e3d6c6da4b178dece44117b6438e *R/boxVDJ.R
f4caf8c5e96a9ebb252012d1a945d75b *R/calculateDiversity.R
e092f9b1579f6deddd1876701bbbfd91 *R/clonoStats.R
5c4f98257377d5f260adff29d81cfecc *R/clonoStats_class.R
92afa79f1a5d1efbc53e6843012a7c98 *R/clonoStats_helpers.R
14dc0539b741a0e2447693ea70f823f0 *R/contigs.R
ba161648946dc8b99b353d7f6db57fb4 *R/pieVDJ.R
29b971256a393e8fa62860a6469da87e *R/runBreakaway.R
0831170fd80cbec6ae614ffb42364f58 *R/runVDJPCA.R
4dbb1797372f02631725da9001439681 *R/scatterVDJ.R
9ed3dd9bc997eda1af2a1bfc00e77163 *R/setup.R
085ee695db2655547f0584049adbf22a *R/utils.R
6414b6bec28aa338d3b39ded38084a50 *README.md
6e708c42f4f9e5e23aaf3f76828528f5 *build/vignette.rds
8644729e0e0c4330baabc6b2180c4d01 *data/contigs.rda
d7fce143dabeb7bfd26d0c53769d9ebd *inst/NEWS
6a893518d4c647097f8b2fbd2ca9e978 *inst/doc/workflow.R
cca191aa89e7f2e61b83b48894ec8825 *inst/doc/workflow.Rmd
4aba1201e59047b777a88b65c5b13150 *inst/doc/workflow.html
7954d1d38eb29faed9398d0d5b12eef3 *man/abundanceVDJ.Rd
5f81578caa3e995a102de60f0dbcae84 *man/addVDJtoSCE.Rd
cf8b88e51ec9a7d3dfb39e0e941aae29 *man/barVDJ.Rd
35fa045074fca2b6afb6fb1fdcd8e19a *man/boxVDJ.Rd
790c2f8954757f7307ec0ce071235c07 *man/calculateDiversity.Rd
e0891d9a640f69e7253b9e51c54d4d8c *man/clonoStats-class.Rd
2490ef96bbc39dd043b35adbcff0a3c3 *man/clonoStats.Rd
29cebc3cf2d7dcb2d144314d864afad7 *man/contigs.Rd
b873c9d93a1bddfda11cd8b7476b5367 *man/figures/logo.png
c35f5c55b599ad4128ecbbc6b4001b46 *man/pieVDJ.Rd
d8e503d544877190ffe9dddeb98c2ca3 *man/readVDJcontigs.Rd
438dcf429760cf1f097bc1dbb942c57e *man/runBreakaway.Rd
c741c1f88f693284bb06a1d8568e53ef *man/runVDJPCA.Rd
4c640642097f2355b57a8ca9b6d1a273 *man/scatterVDJ.Rd
a1127638708de2fb886ad7d00bf5331e *man/splitClonotypes.Rd
b2c551911e5e8ee032eb8c908e07452f *man/summarizeClonotypes.Rd
f8d478de1025b9bfbd749d25c61725ad *man/writeVDJcontigs.Rd
277bef81b96c2e3581a4fddc1bb76f9b *src/RcppExports.cpp
b4c2d2c9de20fa08c30a83fea5e05298 *src/TCR_EM.cpp
deeabfdbc0dd5eafbacc2ca7d78bc5de *tests/testthat.R
fe7f66385a0a3a281c38485f2de5ef47 *tests/testthat/test-VDJdive.R
cca191aa89e7f2e61b83b48894ec8825 *vignettes/workflow.Rmd
