a7e5c0367224dcf5c85ccfa8219b3e3b *DESCRIPTION
99eec2d940784c178aa92c91c2345c29 *NAMESPACE
0ca22a7b5e584b3784abb98f8e7a2c50 *R/Add_custom_vcfs.R
eb9f5e4673a1379821fb9ade0a5fffd3 *R/Create_BED_files.R
5725153d63f9bf13e650a30ea6e00bec *R/Identify_VCF_file.R
17619f0ba95f73f9d610b6432b01c966 *R/Init_and_load_identification.R
11e5ea7390f3b39a7273815536742e96 *R/Match_query_ccl_with_database.R
ca4f47faaf17251311d267934b941bc1 *R/Parse_COSMIC_CCLE_CCLs.R
537467cf86bbf394efbe5bb9926a7346 *R/Parser_scripts.R
975d2869baa38e60ddee36da95b5f7eb *R/Show_database_information.R
d6c0d105e4cf782464e8d1e2aaa2f865 *R/Statistics_identification.R
a144a1daf30e88d31a603e0302fe9536 *R/Utility.R
0daea49a0e69cf98a7ab8c286dc83f3e *R/add_missing_cls.R
d2eab165813b950747a939ad6830f048 *R/remove_custom_vcf_from_uniquorn.R
d370dd21fc2b667432c226af049cf5fb *README.md
58414f680c9db8f5aa7f694c50fcbfd1 *build/vignette.rds
f2fa78118a120938f6cd26260bb05427 *inst/CITATION
75a1aa257126424758d3add478c7ef74 *inst/Libraries/GRCH37/CELLMINER/CCL_List_Uniquorn_DB.rds
9bc95acd0b565ecad8aefb357f485348 *inst/Libraries/GRCH37/CELLMINER/W0.25_Uniquorn_DB.rds
ba6fb2fc3343ddc1e89ddb17f39384ed *inst/Libraries/GRCH37/CELLMINER/W0.5_Uniquorn_DB.rds
892fb2ff9fd7318e3f457f4fd2429802 *inst/Libraries/GRCH37/CELLMINER/W0.excluded_variants_Uniquorn_DB.rds
2a229036051fddee9428e2e1b21f10b8 *inst/Libraries/GRCH37/CELLMINER/W0_Uniquorn_DB.rds
7314b4a38e9eeb1b89651bd7ee807a18 *inst/Libraries/GRCH37/CELLMINER/W1_Uniquorn_DB.rds
7771246658d88a5aa14657180327e8d6 *inst/Libraries_Ref_gen_GRCH37_Uniquorn_DB.rds
f9c5f7b5e9a68de75651dee012ef412a *inst/NEWS.Rd
ef2723dfaaa596c8138e2151f436ed07 *inst/doc/Uniquorn.Rmd
5caac07a0a449ace27aa09df8387991d *inst/doc/Uniquorn.html
3d348beacab78cdf35b5e923efa7ecfa *inst/extdata/HT29.ident.tsv
6947f5006c84d6ec91e6bd67cda0df43 *inst/extdata/HT29.vcf
6947f5006c84d6ec91e6bd67cda0df43 *inst/extdata/HT29_TEST.vcf
d9df1f460c0a31219e9d4fc65c053285 *man/add_custom_vcf_to_database.Rd
ded2c0e63fd6bec6d97f2f17251ccbc9 *man/add_missing_cls.Rd
bb92c80fde6ff6992ab26a8bf7b34230 *man/add_p_q_values_statistics.Rd
875b906fe99d4bee52b4852028afbdfc *man/add_penalty_statistics.Rd
005ebab89cb405c47611458a9869cdd0 *man/create_bed_file.Rd
1b880fcdff2a61d3b6bc3f3333430863 *man/identify_vcf_file.Rd
9e0d2c7033bb9e57c283d8eecc61cfec *man/init_and_load_identification.Rd
b055dbbc3a5ac61699fd38c0ba156b8e *man/initiate_canonical_databases.Rd
8db6f60bb7cfac6f07f88cb3db3e09b1 *man/match_query_ccl_to_database.Rd
1ace0de3c30aadfb10e1a660a5d20e22 *man/parse_ccle_genotype_data.Rd
032fcbd16254ac9938a5a7763f5b0bb1 *man/parse_cosmic_genotype_data.Rd
46b85dfe34b706a39838f53e0607b795 *man/parse_vcf_file.Rd
5404a3b9b26cb7a27023560373bf2cc0 *man/parse_vcf_query_into_db.Rd
9cc127c204d6b37fd2ffcace36fccf7f *man/read_library_names.Rd
74ab31e28e1a2e08c30883d9f20affe2 *man/read_mutation_grange_objects.Rd
2ff458237b21bc92353ae60d438ed8a8 *man/remove_ccls_from_database.Rd
a33a7ee5318ea809fa3c73397348ab78 *man/remove_library_from_database.Rd
5b731c79ac310d03ace66015fc31be49 *man/show_contained_ccls.Rd
22f51a44e7951401dd2a05e0307a5d79 *man/show_contained_variants_for_ccl.Rd
43aceec0d663737e9aa9076247586733 *man/show_contained_variants_in_library.Rd
b1e22f7a20a7639b1563a127d2bc4e3a *man/show_which_ccls_contain_variant.Rd
4d45761ba774e53b1974a95b793b0487 *tests/testthat.R
bc152691223a565e4ec5255b4783bdee *tests/testthat/test_a_Show_database_information.R
bf4560b18503afcfd34610c6aca2d489 *tests/testthat/test_b_identification.R
f6bd3874ddb5f988f19f0db770cfd0aa *tests/testthat/test_c_remove_add.R
ef2723dfaaa596c8138e2151f436ed07 *vignettes/Uniquorn.Rmd
