ff83c00b34843dc088701da0c0a19821 *DESCRIPTION
ed0f12d3a63cab42b0a211ed819d4457 *NAMESPACE
6b08e1913dce60d3f80aed7216c6dfd0 *NEWS
7e504b64cdb9c0b8acc181c114d6affd *R/AICc.R
aa83b7d0907d7e7c881a1f897a5f7ec7 *R/TPP.R
77cd95f2279f30eff6b0243526666003 *R/TPPTR_reference_results_HepG2.R
e5fd4907149056589fb650d7a14bce10 *R/addTableToPlot.R
70f6caac631a201a584792bd0662cf0d *R/analyze2DTPP.R
c4d348c07dc08bce68a8cb10a7266f92 *R/analyzeTPPCCR.R
6505738cee8175520a13f4423450cdde *R/analyzeTPPTR.R
dcd1fe818e2fe1cc7000494c24ae342f *R/applyCoeffs.R
3fa1fe0e7a2a15cfb34742a830dd33e1 *R/assignCompNumber_to_expName.R
2d93f657df8158f238669a660459332a *R/checkAndReturnDataSetting.R
5bff769b01cbd47db1ea9773ef2132b1 *R/checkCPUs.R
670517701d50e1af44b915a7cb11c5df *R/checkFunctionArgs.R
1e44068f6f2fb17f47a1ec20e469ec54 *R/checkIfLegendPossible.R
d9712a7bd2a5782dadcac6bced049f34 *R/checkResultCols_tppccr.R
13309f21fb7e0da773e6c4fb986f14d1 *R/checkResultCols_tpptr.R
bc6ff4dc083d0fa53ae4a67c621ff04f *R/check_if_data_is_eSet_list.R
4ff2895f5d29c6b0baee6e29ff4a5c47 *R/computeMPdiffs.R
879b5a77901afd3a098bdb5a33d4d195 *R/computeMinimalSlopes.R
fd312d12a84fe20fa0ca76e9ac860eca *R/computeNormFactors.R
00a53f04eeaf2420e315d31c468401d3 *R/computePvalues.R
be27cfcc9db2a155afb0145bcc61908a *R/compute_spline_auc.R
213da8cbd8cee9671909075d9e26aea6 *R/convert_2D_cfgTable_to_CCR_cfgTable.R
94fef493c933cc3d4fd75c388cf1f40a *R/convert_2dData_wide_to_long.R
16e1ccf1a768c1429a8e0ee10a031819 *R/convert_trData_wide_to_long.R
70ab7554f4c53768a5d8889079547017 *R/createComparisonTable.R
11b3ee6ec47e22d4e60ae510bdd05db7 *R/createValidPlotPaths.R
1d6111a53d43bce6123d36619c026554 *R/create_spline_plots.R
c08fafbfadfe32cbf86d754e9f5bc2c9 *R/curveFitFctCCR_pEC50qualCheckCol.R
d85aebbc12d8afdde13cebed40d84249 *R/detectLabelColumnsInConfigTable.R
f31fd1c33784f937476313587ed4a42a *R/drCurveParamNames.R
389b798d804a6e298174b1e3e2c675a6 *R/eSetsToLongTable_fData.R
766fd86dffa00ef1f4850e769be17ab8 *R/eSetsToLongTable_fc.R
b0a06b962998a5eeda5bffa3b05faae3 *R/eval_spline_model.R
489ff2a0cad24938b3b3ada0ed02c757 *R/exportFct_addPlotColumns.R
e21dc45c7cd31c0d6c1ef1f00b8b8e29 *R/exportFct_addPlotLinks_1DTPP.R
c31fbcc4d77cbec8d01e738e5a571644 *R/exportFct_addPlotLinks_2DTPP.R
f6b0e246a254ca069d842389e647f95b *R/exportFct_colorCodeColumns.R
c0e88f90c5087a1173d10a7208886c0a *R/exportFct_convertBoolean_1DTPP.R
7d25d07771dba152e7d9337f109f1f6c *R/exportFct_convertBoolean_2DTPP.R
3c7419bddc4f510d306cc2edc60edabf *R/exportFct_ensureUniqueColumns.R
98bfc5926a057815a4a968271e9ad643 *R/exportFct_sortCols.R
9f9550bd5c6d53365f76f9f60396f2d7 *R/exportFct_trySave.R
4bb9a2afe965894ee554beee4c9cbd61 *R/exprSubset.R
86d253d7bc6543f5e5a3d8d83c8d5b23 *R/extractConc.R
51d459caf8bd839676208ce8c38e5ee9 *R/extract_fit_factors.R
60991bf4f840e59386098dff68bbaaf6 *R/fctSigmoidCCR.R
008890c41979aedff867318d2a49121e *R/fctSigmoidTR.R
e00529c4105c688860167c1b0208cfa0 *R/filterFCs.R
1df747ecb93e9e7c218e1157aa3c4980 *R/filterOther.R
9416ce49db43d8ca2bad932347b50b6d *R/filterTables.R
52c6c0b73f8786a037ef2a0af05657ea *R/findJointP.R
4ea6b9ebf670c7019c83af8f030871f9 *R/fitDRCurve.R
dd10c7c0c0f2184e2a820bdb9fa9ddc5 *R/fitMeltCurves.R
ce59a3f5ad6972a96b0881a1bb7c769d *R/fitSigmoidCCR.R
fe0ef5c68cd421c2d18b063f6d215a94 *R/fitSigmoidTR.R
eec5647f4f79ab1149ea586059df4e64 *R/fit_and_eval_spline_model.R
aa660ff5d91820d31ef8479eb5167ab0 *R/fit_spline_model.R
48ce48e8d767f70882898b72439d5df3 *R/fit_splines_under_H0_and_H1.R
7ad4435485b5319ba2df446854a34e9d *R/generateColors4Temps.R
51cca45d1e3d6033973df90f8805f627 *R/guessDRparamBoundaries.R
db456ae3a7e335edc713209bf033deb3 *R/guessInitialDRslope.R
b0ed51b340f1077c97b32d70092ea7f2 *R/guessInitialpEC50.R
201acf0a2bf14571f12f16fe10106058 *R/hdacCCR_smallExample.R
e3c3f0acb05b9fadb559de8c32da6369 *R/hdacTR_resultsTable_smallExample.R
5eb567c3817bfff37a871d1b80180e6a *R/hdacTR_smallExample.R
57c7ec32f6062226e909ad92632cede8 *R/helperFctPlotAll.R
fc4ac5c9ecbb2a890a8fe8cd38de9515 *R/helperFctPlotGood.R
33f387191a13af1aabece7d2f576b235 *R/helperFctPlotSingle.R
ab47f28f5b6bb9cf7eb354aa4f4c70e7 *R/import2DTR_main.R
e1e956324ffbf3f01eff3ced51beaab7 *R/importCheckConfigTable.R
e00af9ea44ccec8ee7f256e7d47659f4 *R/importCheckExperimentNames.R
e6d36506717a2b4aeaaabff8d596b4be *R/importCheckTemperatures.R
90f2f7e5b363ad0194f85ac8aa911922 *R/importFct_CheckDataFormat.R
ccbc258382bf0cfa8377d5fbe92517b1 *R/importFct_checkComparisons.R
fa3061181d8caed0baf10865ce745d8d *R/importFct_checkCondtitions.R
bb09a0edcf980401f238cc1c59084c42 *R/importFct_checkExperimentCol.R
0bc64bbe582c615695121aabf617bb3a *R/importFct_createCCRInputFrom2DData.R
48780617c728e26bd52cf8c859d1ddd1 *R/importFct_create_fData.R
cf556ce654cfe5a628364ad7659b4419 *R/importFct_create_pData.R
dfa3b2ed20413989aeba0e04427bc1af *R/importFct_df_to_eSet.R
6b4662ef51ebc1bb04a19c35dc76d4d8 *R/importFct_extractFCs.R
c7892ba5bc5e568bd77b14a040b8ae5a *R/importFct_fcCols.R
170efb1849c824cb1e9af44eea49797c *R/importFct_makeOutputDirs.R
5444f2db6cabf812bea7c95602a4e1aa *R/importFct_makeUniqueIDs.R
a0e80947ad35f657539ff7906651e2f8 *R/importFct_readConfigTable.R
53bbde5c7815337fbe9581eceaaf11a0 *R/importFct_readFiles.R
c31ead8b368605b6b866c1d6c802a5a7 *R/importFct_removeDuplicates.R
70d9625c1f10c38d31a875e0272a0120 *R/importFct_replaceReplicateColumn.R
6bbd67283f0fb9b371733c30662ce99a *R/importFct_rmZeroSias.R
101afa01d1afea19ec4492feb522f374 *R/importTR_main.R
5d3bff90f68ceb3d9ff7dd330e32cdf4 *R/importTR_tidy.R
acb637c53ac5ba1626e56fc31bd34c39 *R/inferApparentStabilities.R
c72dcc842b75ecad3082d7998c566bd8 *R/inflectionPoint.R
825a7c3f556ea2a81976ed5c976ed15a *R/invoke_spline_prediction.R
963f7f3aad550c24c71356e59c301ad4 *R/meltCurveParamNames.R
42e37f0463a49fc8b71d39f718187bf1 *R/meltingCurveSlope.R
5d064b5e7edba40aab302ae05473715f *R/meltingPoint.R
716e8d03f54da94bd064b88b92915e49 *R/mergeOutputTables_CCR.R
3c51b74afab8f73a86b0473d18f5fa8f *R/mergeOutputTables_TR.R
3325efee44ce3cf6408496b78f0a1b8b *R/merge_cols.R
9c24e853bd6e329740fd861fbd206c7f *R/modelSelector.R
8e9a1019183f190de7256952a8f46b54 *R/mpSinglePval.R
c864ba776259838ef7996a86a7acb81b *R/obtain_fcStr_from_df_annotation.R
942880b9f291112e2fc5e5e70527dbe8 *R/pValFctFilterModels.R
640d409992d5973454c5e66ad8fc6f5c *R/pValFctPerformComparisons.R
8f21be972f765198a04621c500495653 *R/pValFctPerformSingleComparison.R
a79c5e5546bbf6afa1f39a2de34ef4fe *R/pValFct_addMPdiff_and_MinSlope_Columns.R
6cef8ff81e0dfa49c426bc2f37573b0a *R/pValsCurrentBin.R
4293f269594273d75634a09ce94cb189 *R/panobinostat_2DTPP_smallExample.R
0596bd9534a044036ec29833f8dbdaef *R/paramsSigmoid.R
52beb55f964f0cd968a04801dcd008c6 *R/plotColors.R
8d3238b5af3b2159f1efd83cd2b17e66 *R/plotColors_splineFits.R
194136961e63cf4fa29dc38b207ef089 *R/plotDRCurve.R
ce6486e9a895cbae70590bb9ba4b8a25 *R/plotIndividual.R
ebf8527b9d73e36d1f945e2b5b404d1b *R/plotLineTypes.R
5af81b8d105708aa768600c67de0c7cd *R/plotMeltingCurve.R
9315b4d66b015d20620de9952bee6181 *R/plotNormCurves.R
27e9baca26b13d29ec43637b21d8c3ef *R/plot_2D_data_on_temperature_range.R
b8590745dc5bbb2d0056a4fac960a05f *R/plot_fSta_distribution.R
b85fe748c575a86f88092b6b58891b4c *R/plot_pVal_distribution.R
fb28a38de0aff3ebc355845c14b1e8b6 *R/predict_and_plot_spline_models.R
4477c3b1d983580a20ed013423233d69 *R/predict_spline.R
389f82dcb59f99edc6fc3938ea8704cd *R/qcPlotFctVennTable.R
b7b7e313a3e6f38a5168070312c2fa85 *R/qcPlotFct_Bottleplot.R
d70c4d286c899f1ac15aa263de1011fd *R/qcPlotFct_MeltPointHist.R
86ee6d1b0c04b4c3c6c565c11c086a82 *R/qcPlotFct_VennWrapper.R
3ce5eb736632218a9a180609fca272cf *R/qcPlotFct_createVenn.R
b1a2d2ba383d16141d433ab7377ffa57 *R/qcPlotFct_invokeBottleplots.R
538f4874ac280afce84e7fbc4e5342a8 *R/rSquared.R
de315612f3a645ada152a042e315bc93 *R/removeInvalidPaths.R
23a409c4ca8553d11e2595b53f59b2c8 *R/retrieveDataFromESets_CCR.R
e064620ef8b5a4df7e5948b256d17bc2 *R/retrieveDataFromESets_TR.R
7c03c4c9600c675b2e4d541efd2fb2d7 *R/robustNlsPredict.R
1f757ad5167a1bec6e2c033568d42b0d *R/splitIDsIntoSeparateRows.R
1be69671a3d2526ea41064c686078e30 *R/splitTidyMeasurementsForExport.R
745b0f8928c00d73559319ed8591d951 *R/stopImplicitCluster.R
8793eb3441c78a5ed8cd31e2de96a2a0 *R/storeDRCurveParams.R
1d59636330dcbeb16c0253726eaea035 *R/storeMeltCurveParams.R
238587bfdc19c2a03a36b2ae173cbb70 *R/summarizeResultTable.R
542a4419e00b0741a31acc6e4a40eea9 *R/tidyUpReferenceObject.R
8bc4c53592bb3638d93fd3f3a77e91ff *R/tpp2dAddAdditionalInfo.R
3157dd2dc8ebb3bfa8156e80e44300e9 *R/tpp2dCalcFractAbundance.R
dfcd4a216e395d124644db9cf4d7cc8c *R/tpp2dComputeFoldChanges.R
3a7f678039c4abb2f07d404acedbebb1 *R/tpp2dCreateDRplots.R
f14444d0b60d16404cf347088268caa1 *R/tpp2dCreateReport.R
f338d9163d04d84f7994a3f85d64d3fb *R/tpp2dCreateTPPTRreference.R
a434de50891162015e5148f6731a89eb *R/tpp2dCurveFit.R
2d93d69c6a093d1da4113f56add9552e *R/tpp2dExport.R
56ee32cf3e2235f6c14af8552bdd57c2 *R/tpp2dExportPlots.R
8039d6dd7b51cea1b2bb4d0118d57e14 *R/tpp2dImport.R
2b624f8131be093b5821c5933240dd52 *R/tpp2dMerge2dRef.R
a84d719c1ad6038e5d946c9f01ef28b8 *R/tpp2dNormalize.R
be5ac33f42c192bd612bad1f871dad22 *R/tpp2dPlotQChist.R
58d11ae15e45763de5a2acebd16bc001 *R/tpp2dPlotQCpEC50.R
07a0c10d48af2477b90a92e09a852909 *R/tpp2dSplineFitAndTest.R
8344a54f594e3ec679f191f5c7e1ef3c *R/tpp2dSplinePlot.R
8f7baafd26ddb3996c5a416ebe79ef38 *R/tpp2dTRReferenceObject.R
0c2d07679e0ee562bf21e0479326f5b1 *R/tppDefaultTheme.R
1d0ccde121947492bedfdb60df2e69d3 *R/tppDefunct.R
b30577a2fbf5997a0f3114731bfe3148 *R/tppDeprecated.R
e4a4ca9b25f1ab269e6434b98e9f5ba8 *R/tppExport.R
f930e72c55928c1302884b6b1cd31faf *R/tppQCPlotsCorrelateExperiments.R
ee3cefdcd1caa1d1a4b6df98b8a27e39 *R/tppccrCurveFit.R
86a1e249fe61692c7b5909e7fc11ae5a *R/tppccrImport.R
1edde6b11ef87637a8ad3585de3c72ac *R/tppccrNormalize.R
4e88645273db58367c492ffbbbf94143 *R/tppccrNormalizeToReference.R
3f07617ffedb1d8baf184b7c2a77782e *R/tppccrPlotCurves.R
97b53667e2b2116cfaaba02c60c72c69 *R/tppccrResultTable.R
a27df0421499c542da1ee3b6f1cff22c *R/tppccrTransform.R
842053d6a07b5f5b119dafc8d0c6079c *R/tpptrAnalyzeMeltingCurves.R
d6f971f331da99be84be1748f0cd0403 *R/tpptrCurveFit.R
e09db60046f01b3950dad6e782ed9be9 *R/tpptrDefaultNormReqs.R
5b05cfe20dde5a1767aadbedc670f1b8 *R/tpptrFTest.R
abee5064c30c4d64b5d88d614b6755ba *R/tpptrFitSplines.R
20176c7e771f71d92d62dd7de9d8fc41 *R/tpptrImport.R
b78cb836e94d30749818f36f1907579d *R/tpptrNormalize.R
7beff15538d23d14ceb1e5aa1bb4f42f *R/tpptrPlotSplines.R
bbe92c9518641489c9f3143fc1bb73f6 *R/tpptrQCplots.R
96c5b9804590813d5164a8c90bac7d00 *R/tpptrSplineAUCs.R
cf1536158d3588dc11e9ad01923e711b *R/tpptrSplineFitAndTest.R
2e6cd579ab32d3992bc38dd7cd55df12 *R/tpptrTidyUpESets.R
c149476e050306efe3f2cd592275401c *R/writeTRRefOutputTable.R
eec4de1bef6483ec88ca68ab3e11903e *build/vignette.rds
8f9f2358409273ebc5c5d4ac78edbcc8 *data/TPPTR_reference_results_HepG2.RData
5355786af3553bf78a98315bc8dbd399 *data/datalist
3b2e7f58a451bafc144053e0cf4a7083 *data/hdacCCR_smallExample.RData
f8b1baab71c2edb5c204a0d2da38f7d5 *data/hdacTR_resultsTable_smallExample.RData
b3013f12ee19b16668f58c7d5f875928 *data/hdacTR_smallExample.RData
dc278f421f5ae48596b6f289e32a2901 *data/panobinostat_2DTPP_smallExample.RData
fdd2fdac28485b4a403c95e973cecdeb *inst/doc/NPARC_analysis_of_TPP_TR_data.R
d781b048fe8f025574a73d4267173742 *inst/doc/NPARC_analysis_of_TPP_TR_data.Rnw
ca6d47d46491d4d8aeeb736e420c9e92 *inst/doc/NPARC_analysis_of_TPP_TR_data.pdf
3a05389f1489cbd3bc422a36d21b8fd4 *inst/doc/TPP_introduction_1D.R
b10011dcfcc5e495cc1cc26fae4b4b47 *inst/doc/TPP_introduction_1D.Rnw
4b4735a7f3c912720ff4ffd49792f8eb *inst/doc/TPP_introduction_1D.pdf
b7e9d2d2fddf6852ac6b99f1379031ca *inst/doc/TPP_introduction_2D.R
b987d018f474c9f25da4b77d01c7f0db *inst/doc/TPP_introduction_2D.Rnw
d20c679300fa174ef74f0fbaf37d4309 *inst/doc/TPP_introduction_2D.pdf
47d6dcf6728d567fa8dff94846cf7146 *inst/example_data/2D_example_data/PFC_39093_PF1_QV1_P0101918C.txt
49936bd44f6f198204a1a969082d9a56 *inst/example_data/2D_example_data/PFC_39099_PF1_QV1_P0101908C.txt
36404d1fb410c4c8fd29d7cd73180527 *inst/example_data/2D_example_data/PFC_39101_PF1_QV1_P0101898C.txt
bd6aa3e7c9e0e1b15883f40e4ac9ca2b *inst/example_data/2D_example_data/PFC_39106_PF1_QV1_P0101868C.txt
72a3931b1e3fe02ba254fb369357e571 *inst/example_data/2D_example_data/PFC_39108_PF1_QV1_P0101878C.txt
b18d4d236187e0d929cc837585bcca94 *inst/example_data/2D_example_data/PFC_39110_PF1_QV1_P0101888C.txt
69ae5a1fbc257b00456c2d9dbd5d6768 *inst/example_data/2D_example_data/Panobinostat_TPP-2D_config.xlsx
c4df4f396442f81fd1987e0ab9a85fc7 *inst/example_data/2D_example_data/fractAbundInData.RData
b9f231613961d258afe24bcc7472c54b *inst/example_data/2D_example_data/referenceNormData.RData
7ac1093552eaf281576d5f20e605e5d6 *inst/example_data/2D_example_data/shortCCRresults.RData
bdaf865b9856729c2084de6081e72521 *inst/example_data/2D_example_data/shortData2d.RData
f4d14590fe21a76f30fa18c3e5889ee7 *inst/example_data/CCR_example_data/Panobinostat_TPP-CCR_config.xlsx
5e0f32079fbfa4b4e7ffcb5aec39c4e4 *inst/example_data/CCR_example_data/panobinostat_1_merged_results_20150227_1017_proteins.txt
d41ccfe4fb92d18ac9daeecc1db7bf19 *inst/example_data/CCR_example_data/panobinostat_2_merged_results_20150227_1110_proteins.txt
9354d118e09492f93f7b8bc8d1ca861d *inst/example_data/TR_example_data/Panobinostat_TPP-TR_config.xlsx
0c67cbada22f6f71a009961f3e5b4358 *inst/example_data/TR_example_data/panobinostat_1_merged_results_20150226_1013_proteins.txt
16b1e70d2e5c17c3bd55f0c9604a0683 *inst/example_data/TR_example_data/panobinostat_2_merged_results_20150226_1139_proteins.txt
b829591e84c8a081a4d4ccb6b6862b7a *inst/example_data/TR_example_data/vehicle_1_merged_results_20150227_0908_proteins.txt
fb36f922b446d48f649597a371ebdd62 *inst/example_data/TR_example_data/vehicle_2_merged_results_20150227_0847_proteins.txt
1256b0a8d12397ba0a6e1ba06829eef6 *inst/extdata/randomESet.Rdata
e5dfe3c3cf805dab702697c1d69a5acf *inst/extdata/validationData_meltCurveFilter.Rdata
ac65d119549f18e6a29ef490492f7833 *inst/extdata/validationData_pvalBinning.Rdata
5780f9c0ddd0e6bd267e6d7bc4a02c34 *inst/extdata/validationData_pvalComputation.Rdata
34cf6463786c086fbdc26258775f4226 *inst/test_data/Panobinostat_2DTPP_smallExample.R
dc278f421f5ae48596b6f289e32a2901 *inst/test_data/panobinostat_2DTPP_smallExample.RData
32427e8533075fe7a32b238cbe30c6a6 *inst/test_data/panobinostat_2D_fcResults.rds
21d5b630e163b043c02b60c3f5d2ad15 *inst/test_data/panobinostat_2D_fcResults2.rds
b3d7fd094076872739b8d107d295fdc7 *inst/test_data/panobinostat_2D_fitResults.rds
bbcb9c667cff575d2fe212aeca32809e *inst/test_data/panobinostat_2D_fitResults2.rds
5c5e358c5fb3558f39dd004465c0f744 *inst/test_data/panobinostat_2D_fitResults3.rds
020b7cb8b6fcdd5d66709139d2f962e4 *inst/test_data/panobinostat_2D_importResults.rds
9e1a158df9cc2f917c293587c7369acc *inst/test_data/panobinostat_2D_importResults2.rds
c9549a07a02d3bb7c7948ebb9a87ee64 *inst/test_data/panobinostat_2D_normResults.rds
f43fe33c95beca4e8dd409cc38c60a02 *inst/test_data/panobinostat_2D_normResults2.rds
3a4bc9d77bd53291f50b26d9e68df87a *inst/test_data/panobinostat_2D_normResults3.rds
c9c7d328ba3df010cd076da9ecdb4419 *inst/test_data/panobinostat_CCR_fitResults.rds
04b312febb661cf7e9f3ba6f022f618f *inst/test_data/panobinostat_ex_confg.txt
77926387b04492a51eebe58ce3ae78f2 *inst/test_data/panobinostat_ex_confg2.txt
a131fcceb128328668c30dd31027c05d *inst/tpp2d_report.Rmd
61d2409e8e5b5de117a9fcf93530d335 *man/TPP-defunct.Rd
d16e44c8b3cffddc17df3e0602d21691 *man/TPP-deprecated.Rd
5e477fa37be44235689e0ad30edfd8d1 *man/TPP.Rd
ba23141167dcb88227a6727820548bb3 *man/TPPTR_reference_results_HepG2.Rd
30f134007319e08bd370246be2dd78cf *man/analyze2DTPP.Rd
9d7903603a55f1bebde7187580f8c845 *man/analyzeTPPCCR.Rd
fc30284491e098c33e78d5df09d85fe4 *man/analyzeTPPTR.Rd
0d60cdf910e6c0a648dba3d23f753dc7 *man/hdacCCR_config.Rd
8ed42ca77b520195c2d9514d02ffe3a8 *man/hdacCCR_data.Rd
a60e33b7b3d75d237171a2e0b27e4f3d *man/hdacCCR_smallExample.Rd
b889f0c2c0a39ba58a78b0aa9dafd247 *man/hdacTR_config.Rd
2da7e8341414bc7e881a8a3749617d8a *man/hdacTR_data.Rd
11b74cebdc071593ca693239c15d43ef *man/hdacTR_resultsTable_smallExample.Rd
b49ad6b3fc94cc3dbe0bd0342016404c *man/hdacTR_smallExample.Rd
6c4fc39beccd9dd5560c9fa3abb19d34 *man/panobinostat_2DTPP_config.Rd
8333895cc03e7f66d6f36aa3d13d6810 *man/panobinostat_2DTPP_data.Rd
5ac4e98c682e1701fefdb9d7ba1eff28 *man/panobinostat_2DTPP_smallExample.Rd
3f6483ea2d5cae1fe2ca54fcd7f415aa *man/resultTable.Rd
18433738acd39decad35f64cf9ed7565 *man/tpp2dAddAdditionalInfo.Rd
402c2750d9ebf813a601ea74fc9c8929 *man/tpp2dCalcFractAbundance.Rd
30d2d38957ec4f5602a47a77350b057a *man/tpp2dComputeFoldChanges.Rd
f919985329bd19059da3393edf69276a *man/tpp2dCreateDRplots.Rd
ebde6f3232b9d8d3e912e2ebd74d2bdb *man/tpp2dCreateReport.Rd
d244c01c0f305642202c18dcdfa4bbc3 *man/tpp2dCreateTPPTRreference.Rd
8dcc36ed1a7ea9cb2739302dacf697c2 *man/tpp2dCurveFit.Rd
c8ed354b90f751d13a19c69c6d6be59e *man/tpp2dExport.Rd
2f282c5d02c6d00ae11ae2a741c2a04f *man/tpp2dExportPlots.Rd
4a42210e12f62ebe026a50146250af67 *man/tpp2dImport.Rd
dfea06643475013e54c76af0d8efc2d0 *man/tpp2dMerge2dRef.Rd
f591d1f718e87720a42757ef63872217 *man/tpp2dNormalize.Rd
21a7ce73bb3c7c32b65dac36471dcba4 *man/tpp2dPlotQChist.Rd
e69af87b99a03b8d303831900c731f79 *man/tpp2dPlotQCpEC50.Rd
77c5a6f26ce51f723b68b24c17b7848c *man/tpp2dSplineFitAndTest.Rd
9ce482cf15f75873e096fe88e35476c0 *man/tpp2dSplinePlot.Rd
bf0060934ac437ede0230ea94872c6c0 *man/tpp2dTRReferenceObject.Rd
3f56dfb1a35b2c357163e045089a848f *man/tppDefaultTheme.Rd
f2918a752064a78de304810860c42189 *man/tppExport.Rd
5086eda8c5d7bb4b48af3a81612e2aa6 *man/tppQCPlotsCorrelateExperiments.Rd
108c3919472f8c35ed5c9bcd84e97ff3 *man/tppRefData.Rd
bdc997ab62dcea86ba199f792a321db5 *man/tppccrCurveFit.Rd
ad4b68a98f243d6d1a99d1af210cb616 *man/tppccrImport.Rd
2a01c3e9848eeecc2a4118d825493d0a *man/tppccrNormalize.Rd
3a6b3745ec6e51fa31b33a3a85490976 *man/tppccrNormalizeToReference.Rd
061f4590c232dd673edb34cc289d4931 *man/tppccrPlotCurves.Rd
50d451bc6abe64a6adf13a40e5ad3ccc *man/tppccrResultTable.Rd
2512b63b5c069bbff9ef7762b5f02abb *man/tppccrTransform.Rd
77dcc4b81b320b690717f1f46a428dd4 *man/tpptrAnalyzeMeltingCurves.Rd
746b25ec23bfe9c309938895502a0916 *man/tpptrCurveFit.Rd
d4b42b4b795c2219f1bbf1d4b1c5175a *man/tpptrDefaultNormReqs.Rd
668143f0eb2ef2cbbf84656e7bd261bb *man/tpptrFTest.Rd
896952d4f3c891c1406d614049586ec0 *man/tpptrFitSplines.Rd
1efb9d0b4d40a177198cda2eb7b9fc2c *man/tpptrImport.Rd
636b547dd5c72dbee89aa08b0418baee *man/tpptrNormalize.Rd
2051038eaa4e935de04abdf883baeadd *man/tpptrPlotSplines.Rd
91b99de0574d9aeec9e4289748f29fde *man/tpptrSplineFitAndTest.Rd
3ba9900e42c53d3a5f024c4c5e4caaee *man/tpptrTidyUpESets.Rd
0b63253ee313262a628ce15972d12fa9 *tests/testthat.R
06bf8523bd9b55fbeffcb3227c86ee19 *tests/testthat/test_analyze2DTPP.R
2b9ee6f4d80761987ae7cc68419bccb3 *tests/testthat/test_analyzeTPPTR.R
b8f037f8877adba9423ac18fcfd37f1c *tests/testthat/test_applyCoeffs.R
f0b49f8f5da67a84f595a1cb016b9c99 *tests/testthat/test_checkAndReturnDataSetting.R
9e7ec63d17d4d14ec64ded40d85665f5 *tests/testthat/test_checkResultCols_tppccr.R
289968bc729c10877302eb92e321d4d5 *tests/testthat/test_compute_spline_auc.R
80b90fcf93d53115d0e861fbbb0d0628 *tests/testthat/test_convert_2D_cfgTable_to_CCR_cfgTable.R
d72a211930904d460cf2239908c3e3d9 *tests/testthat/test_create_spline_plots.R
012a8fcd1cfa26c399f82c984cb90c54 *tests/testthat/test_curveFitFctCCR_pEC50qualCheckCol.R
e76de1aeba7e1bb1378e2c0020fc4149 *tests/testthat/test_detectLabelColumnsInConfigTable.R
7f7ce4edb91cc16785537732d5e9fc6c *tests/testthat/test_evalSplineModel.R
21c6ef07f8fdf31336d56d493625f7ee *tests/testthat/test_extract_fit_factors.R
aa288c4ee8861bec5ed8cdff8c17da3b *tests/testthat/test_filterOther.R
515ff81ed8c464fbd7c06c0b5b266ff0 *tests/testthat/test_fitDRCurve.R
828233c53663ddf2375997d057d277e9 *tests/testthat/test_importCheckConfigTable.R
cdb77bd6e0b03dfcb2fe4b8daed02654 *tests/testthat/test_importCheckTemperatures.R
4d1346ea67d0204b3f60f09579044d86 *tests/testthat/test_importFct_checkComparisons.R
5f8cb9fb3181c26cb126c96b0e62d138 *tests/testthat/test_importFct_checkConditions.R
f93c81947bce5fab04d2230966fd2a02 *tests/testthat/test_importFct_checkExperimentCol.R
0bc076f8a80599007fed82350e887051 *tests/testthat/test_importFct_makeOutputDirs.R
a4c2d7189622b20a936a7b759b0bcb80 *tests/testthat/test_importFct_readConfigTable.R
68624f6377968050a6058c9b98f97b57 *tests/testthat/test_importFct_replaceReplicateCol.R
181becf659681be65dae42252509ea0e *tests/testthat/test_invoke_spline_prediction.R
c2469003f165c2e5e907b3da98407bbf *tests/testthat/test_mergeOutputTables_TR.R
70eba0545100b03f155293db89c749b9 *tests/testthat/test_modelSelector.R
8dcd458aeb41c1ffd8df0be07e032468 *tests/testthat/test_obtain_fcStr_from_df_annotation.R
461b094ed939b67259dfb5222b1801d5 *tests/testthat/test_output_filters.R
4b2140d0828d868839ad2783b3fb9fa1 *tests/testthat/test_pValFctPerformSingleComparison.R
25c1850af0837eb906831b7d24c7242b *tests/testthat/test_plotIndividual.R
351f6f3581a2dad8ee2152197ae7f474 *tests/testthat/test_predict_and_plot_spline_models.R
729e789f31b397f8d2d330c580788824 *tests/testthat/test_predict_spline.R
c1c651377d9a624d236749c7791e6ec5 *tests/testthat/test_pvalues.R
b6aa0add69768ba37f5252d2cb223aad *tests/testthat/test_splitTidyMeasurementsForExport.R
5cbdcd61885e99822de9533a437d6073 *tests/testthat/test_tpp2dCalcFractAbundance.R
ef338f05ebfa680ab7f41f97d04f4e2c *tests/testthat/test_tpp2dComputeFoldChanges.R
97d5e5eddf6c8ff49b3700039516190c *tests/testthat/test_tpp2dCurveFit.R
6491e384db3827b9ba10751d73a3f9cb *tests/testthat/test_tpp2dExport.R
5ee0070b7f1aaf690bbbba55c3b3d9a1 *tests/testthat/test_tpp2dImport.R
ea7037a9a8b458284dd390e98719822e *tests/testthat/test_tpp2dMerge2dRef.R
3339c7fdbc64e02e96d9fb925fc8b764 *tests/testthat/test_tpp2dNormalize.R
44fd54d37b2b53a320d5f01ab54a31ed *tests/testthat/test_tppccrNormalize.R
4bdaad41e0494f70c751610511ed2031 *tests/testthat/test_tpptrFitSplines.R
a61e71022d47d8204e03d88c6cac52b9 *tests/testthat/test_tpptrNormalize.R
458cc11a50d12471ee84103820d9bb07 *tests/testthat/test_tpptrPlotSplines.R
77a6bed4e9aeb4769223c78fcb8ac913 *tests/testthat/test_tpptrSplineAUCs.R
af32eb4086b9e470d3d60b4376a6434a *tests/testthat/test_tpptrSplineFitAndTest.R
d781b048fe8f025574a73d4267173742 *vignettes/NPARC_analysis_of_TPP_TR_data.Rnw
b10011dcfcc5e495cc1cc26fae4b4b47 *vignettes/TPP_introduction_1D.Rnw
b987d018f474c9f25da4b77d01c7f0db *vignettes/TPP_introduction_2D.Rnw
da9cc4c90b49caf9512d0e94b7450bb7 *vignettes/TPP_references.bib
