04477bde99042cd68e884194e933eae1 *DESCRIPTION
4a89db09856d08e4edb816f39674e1e9 *LICENSE
ea74d758d3352c8c0148e6b5870f4fe0 *NAMESPACE
ed32c092eb9817c58aed27bdbcbd0c25 *R/OriginalModel.R
1a96037d2890ff21ddd0df60ad21ae26 *R/TBSPapp.R
6842a05ad72347a1c709b4d00ea4ff9b *R/addTBsignature.R
40c273024567b51b413664e13eed10df *R/bootstrap.R
c51d3a4cda6a52245ca7ffea570fdf66 *R/data.R
0db9c6b9b0fc4f1454a3bc5fdeff6391 *R/evaluate.R
fa8509d3e1c4577a62194fd134bead1e *R/plot.R
38a919ba37fa65aa77c9919a550155eb *R/profile.R
32ef345dc949f26579f25a1cd5b2497e *README.md
2fb9fdaed49bb74dc0cee8f68fb82a3e *build/vignette.rds
b546ef5e58d1b43900258d753aee4475 *data/COVIDsignatures.rda
11210b98d285eb38bf8951a8f6d048ba *data/OriginalTrainingData.rda
5694c45bab11a0e6bafccf7fb17f31d9 *data/TB_hiv.rda
c74b8819f9c1ee3866966567884b5871 *data/TB_indian.rda
d48b66ec244125b92ad3b4221e4ef74a *data/TBcommon.rda
38ac5fb4a0e69b4badc763b05f172167 *data/TBsignatures.rda
822f2737b1cd9e06c0d787803fb6ae27 *data/TBsignaturesSplit.rda
a201b8ddfb296d86d82bebdf22a03a65 *data/common_sigAnnotData.rda
74ced4b16e456833c0b83ac73f0e26e9 *data/sigAnnotData.rda
2b20034316abfd4c3b4aff58bb44fbe8 *inst/CITATION
baf84b21496231d64d5d86e1f2464470 *inst/WORDLIST
d9ccd8a17ebd679501566897733a446d *inst/doc/tbspVignetteT.R
61a66fe09a2c55971487e669b94f729c *inst/doc/tbspVignetteT.Rmd
67ee11efe895fc696d4946d047389b6f *inst/doc/tbspVignetteT.html
18fc90e3ab84225560dc528b3dfea25d *inst/shiny/app.R
8e11acd66d0951577db5aabe36cbe75a *inst/shiny/server/server_auc.R
904e9c62ca2b62e747376265734b41ff *inst/shiny/server/server_profiler.R
9b2683582664775ded5189712806c747 *inst/shiny/server/server_upload.R
cb683c9f0c17eac591b826bbb03d4a82 *inst/shiny/server/server_visualization.R
58d68c92344ac8d70597a0c830fc8025 *inst/shiny/ui/ui_auc.R
9c109637ceba0860184ab9ab3a4f755a *inst/shiny/ui/ui_profiler.R
277813c115b18778e435ba2736d5d72d *inst/shiny/ui/ui_upload.R
cafebe548e88d24d54888ad8cacf294c *inst/shiny/ui/ui_visualization.R
5fc721f170fa48b83356b0f3f6eb922e *man/Bootstrap_LOOCV_LR_AUC.Rd
2edf6cc5491ac1843d9b368ca46db8af *man/COVIDsignatures.Rd
2c1ac2f5c6b749b4efd65ee250cc56e0 *man/LOOAUC_simple_multiple_noplot_one_df.Rd
4b3dbc2fbef9ae8daea0a9dcb4f0abba *man/ObtainSampleScore_OriginalModel.Rd
5a93861903e0e4ca73e89532d271df27 *man/OriginalTrainingData.Rd
d88037f4baac0a9fef06b6be8ada131e *man/SignatureQuantitative.Rd
625f00c32a45db9aafe9dedccd90c6ea *man/SulimanOriginalModel.Rd
45723f597f7fed8a1b5742509e7808e2 *man/TBSPapp.Rd
0c60be5c4724cc0ff474e7734a48bb1c *man/TB_hiv.Rd
6c11b2abc5bdb501458c3cf1a495a79f *man/TB_indian.Rd
20f913b4d828707f20d08d3009d1c781 *man/TBcommon.Rd
a88ffb07a838eb4ecacbbc8ce3a49ad5 *man/TBsignatures.Rd
ab2aab1764e3694d2f5048bb13421008 *man/TBsignaturesSplit.Rd
0ba0170241c71f79b7d6c3ccdcc633f3 *man/addTBsignature.Rd
6bda06a547529a37b1390597cd39ac26 *man/bootstrapAUC.Rd
ca13e6d55a99120c131561dc3f622002 *man/common_sigAnnotData.Rd
2ef64245e95d77311757d466c2fd711b *man/compareAlgs.Rd
08a09b6593f856e6cc5fd13441c2b165 *man/compareBoxplots.Rd
3aebc157e84f79df54c83093c97d7fd7 *man/cv_glmnet_OriginalModel.Rd
432a0dbda9fa964a7ed3cdec4660c09d *man/deseq2_norm_rle.Rd
56fbafbdf7ae58d6933682a4b9ef792b *man/distinctColors.Rd
92d0f66f611edff2cee29dfabf0f0ec6 *man/dot-OriginalModel_NoRetraining.Rd
afd5e9118412048691bae0c70a731e3e *man/dot-OriginalModel_Retraining.Rd
6dbf3d2b753638cc27e0b8fd77a0f371 *man/evaluateOriginalModel.Rd
f36ee216486a5bf240a19d0431c9b018 *man/knn_OriginalModel.Rd
4fd34510f3b35828a2c6705025d1e07e *man/lda_OriginalModel.Rd
2321c51d2b5a72cdfa62b0f451f1485a *man/mkAssay.Rd
3d970b574f2f9d36b0f751da3a76c5fb *man/plotQuantitative.Rd
423076dcd21afc9cf0b535381d020597 *man/randomForest_OriginalModel.Rd
64d5eaffa5119dd45097d6e59fb6e387 *man/ref_combat_impute.Rd
4ae0df544360a49c474b085f627ef70e *man/runTBsigProfiler.Rd
616390f0c204363888f1fc34f3aba4b7 *man/sigAnnotData.Rd
7daf971d15962407026e0ed2324c8678 *man/signatureBoxplot.Rd
36593b150fbb30463cc139933f22dba4 *man/signatureGeneHeatmap.Rd
34a5dad2164c4b1a66745e565351023d *man/signatureHeatmap.Rd
5b2c3bc8fd37c130c480dbc30d0ae6b1 *man/signatureROCplot.Rd
b5e5cd00e16d93573a1440849a40c2e7 *man/signatureROCplot_CI.Rd
34366885ba96a404c7fe387073810c37 *man/subsetGeneSet.Rd
f3a3e10b2f3f2d1b1114c6eaadf9a158 *man/svm_OriginalModel.Rd
b8dd7fcf6743a846d404d61719ba9a2e *man/tableAUC.Rd
292719f7ef35fa2eda1f7b2d83ad859a *tests/packagecoverage.R
9566921a96ff55c1a51b6eb898d25884 *tests/spelling.R
4ef14e6ade1877936764da060164665d *tests/testthat.R
63ae71cfa730b5148a43979e5bad8214 *tests/testthat/test-OriginalModel.R
0d566eca7731bc905f56246bbdfe2743 *tests/testthat/test-addTBsignature.R
815973ea5cd8346b3a3223582a73b396 *tests/testthat/test-bootstrap.R
cdc25bf6aa7270d2d7f9e10caac5e0cc *tests/testthat/test-evaluate.R
238db107899515c2bb46ceeac296b569 *tests/testthat/test-plot.R
293802684730ce7685ab00a71788d6da *tests/testthat/test-profile.R
61a66fe09a2c55971487e669b94f729c *vignettes/tbspVignetteT.Rmd
