3152c20c8f076277773465b85a59dd51 *DESCRIPTION
fa27e6602ae848650141f8e8b2224dd4 *LICENSE
7942f86cf574d3b9f97819d8fa40eaba *NAMESPACE
b21eb3d04e898ac03a0f90a5589e565d *NEWS
53909ad28be719ba873d3ada475cb1aa *R/TIL_barplot.R
2a4182becbce772c9efdd2fc326a0cad *R/algorithm2.R
07622f201b09337e22a5a49d36fbb833 *R/collapseCellTypes.R
0200464cee560271db136e5b6575946f *R/convertCellScoresToCounts.R
ea55c1d1c43f88a69a0743becc7a04ba *R/convertCellTypes.R
335c8113d9e5c35fb2276aeb6519496c *R/create_profile_matrix.R
8f576b79c104eab4557017cf7b3c53de *R/data.R
71e7df21de233763be5a34009fe27320 *R/deconLNR.R
4e99e6985d3291330253fed85e2aabeb *R/deriveWeights.R
3f163a3acd43ad13de4723acb702a958 *R/derive_GeoMx_background.R
8c861c4a9a184bc8ab55273ad072def6 *R/download_profile_matrix.R
c761ff85287539b8d20c25be47475ac7 *R/flagOutliers.R
bd061543e280bd70ccc8afdf3785f2e9 *R/florets.R
7161562e578e911ba82d736951cd2ebb *R/mergeTumorIntoX.R
10868622d896ed80e0974e0b6564de37 *R/package.R
e7b66497d8d84e5698976c244aded915 *R/reverseDecon.R
b9d08c76e9b3ee8341d40995ee265945 *R/runCollapseCellTypes.R
bc5a61601445b836fd1e4db0a0ee446e *R/runErrorModel.R
8acd04bb31a5731732911dfc79165587 *R/runmergeTumorIntoXGeo.R
115f28e71abfa9f413c40802620be854 *R/runreverseDeconGeo.R
96cbc91e704489035233b45e922bc5c0 *R/runspatialdecon.R
7816e41e686d46738e738876473d767d *R/spatialdecon.R
12a6bdd29304c75d569e8d7b2d98cce2 *README.md
8d068b52eb948326670e5ca5fbaed3d6 *build/vignette.rds
5e32a8f5a189f0e00f0e185c647521a6 *data/cellcols.RData
9f13f7a0413a25312b2e2a7280bb27b8 *data/mean.resid.sd.RData
561d3fe3b782b3d04051ecba6e49b05e *data/mini_geomx_dataset.RData
c2803766014034b8ce530af23282fe91 *data/mini_singleCell_dataset.RData
90045b2f46816eba20495a876aa40627 *data/nsclc.RData
578336593759337658bd92c230197d16 *data/safeTME.RData
630c47c08945b216547e807dfb237ad9 *data/safeTME.matches.RData
884067ccfb6a8d39c1a396dccd2fea70 *inst/doc/SpatialDecon_vignette.R
3f8e34a7ecc6c7cd34451a4391b3300c *inst/doc/SpatialDecon_vignette.Rmd
b8dd352ac4cf99cca1289993cf0cc417 *inst/doc/SpatialDecon_vignette.html
15e33caa140d2280527b0b7c48ddd7b1 *inst/doc/SpatialDecon_vignette_NSCLC.R
4c606c1ee0c035d4d118e336d42970c4 *inst/doc/SpatialDecon_vignette_NSCLC.Rmd
ec49eb3cc40a02dbbc0bebf28db8d394 *inst/doc/SpatialDecon_vignette_NSCLC.html
fcfd579f4941594bd1bd4dd32a1e41f3 *man/SpatialDecon-package.Rd
5f2fe131f22d4056a45780be7f5a1f04 *man/TIL_barplot.Rd
351a5e371488058430ec4fbaa5306026 *man/cellcols.Rd
d194afdf1b792be72397e49bbdbf2211 *man/collapseCellTypes.Rd
18b27c78277aba1e2964e4eb045e6db7 *man/create_profile_matrix.Rd
76df39f91a2637fc378c8e25c94ea86d *man/derive_GeoMx_background.Rd
293ded0036ff273a68ca490850576917 *man/download_profile_matrix.Rd
2d942f47a7c226e40f19eccb235ce758 *man/florets.Rd
f38bfafb05b202e390c9497bfd5d634e *man/mean.resid.sd.Rd
56a642c44d43bbd13c9fd22ecb7913b5 *man/mergeTumorIntoX.Rd
28f7e1a9e23fe383ba779906e8b14a60 *man/mini_geomx_dataset.Rd
12773880867e84302c3c6484f0d6f023 *man/mini_singleCell_dataset.Rd
72bf529959825c5cdbb96f0940f7a8bd *man/nsclc.Rd
0cb5f60929eecab08538f6e28f289706 *man/reverseDecon.Rd
d0538ea7f273700b0e19d2e9ca5bc5af *man/runCollapseCellTypes.Rd
98f40512de0fbff6249b5c3a1202dbf6 *man/runErrorModel.Rd
a3e4c7f15b5ba1c8170124f3666a6b19 *man/runMergeTumorIntoX.Rd
54b47b7f270d3e0416ad2372173ccf55 *man/runReverseDecon.Rd
6a4cffd2559451e36467b2088e36939e *man/runspatialdecon.Rd
b48e8518049a80af9dfe293ee7a97cf5 *man/safeTME.Rd
603cd423790b2f720e7c4b2e5ba6e283 *man/safeTME.matches.Rd
41be41441647e8c85d5fc606d21e9ec6 *man/spatialdecon.Rd
d260677446f12c046730f1c4f8e9dad0 *tests/testthat.R
a04a442f674a751d914bae748dfd822f *tests/testthat/expectedtestresults.RData
033ad1edd27fe4c8c8893f556fe8e710 *tests/testthat/test-integration-testing.R
afbb6751da8a07264b38c6a0fd5f23de *tests/testthat/testdata.RData
3f8e34a7ecc6c7cd34451a4391b3300c *vignettes/SpatialDecon_vignette.Rmd
4c606c1ee0c035d4d118e336d42970c4 *vignettes/SpatialDecon_vignette_NSCLC.Rmd
