578a64f4705be0272cd5a5ad070a0240 *DESCRIPTION
9051c74b7ca307d91392756bb82437f2 *LICENSE
a8593bb99dc008125735a07b8b5f9525 *NAMESPACE
00a6323403beb858b9a003e53ab6202b *NEWS.md
4c80d6173d5cbe6c69a9e9be89f75f8d *R/QC.R
21b83a05fea967fec8edf4157615462a *R/globals.R
ab48dc7f578babbcd834169261b63081 *R/plotUtils.R
f077a139e4a52a5c252155b977a07ac4 *R/polygons.R
62b141dde3b897f249c541632b500bf4 *R/readCosMx.R
4e8286989fc96d074892ae47664680ff *R/readMerfish.R
09e14dcfd4a8c11033e63222445af95b *R/readXenium.R
fcad60ce916d1cc42b248271666835be *R/spatialQCPlots.R
0d6f79a1faed1305d481f470ea0ca90f *R/utils.R
fc78300f2a885bb8673005c8647ce199 *README.md
f61fe84b1aabb6800f8c98ff0917cba6 *build/vignette.rds
bec103608a8f515d6809f0d93c8536d4 *inst/LICENSE.md
f6cabd0ffbea54115e114218ab04a5dd *inst/REFERENCES.bib
d1af4018fed694c0324cfa2ef1085fdf *inst/SpaceTrooper_logo.png
d6a842de8184d9e675c7d1ad7fd8e87b *inst/doc/introduction.R
6ec8ff416fa3537d60ece88689ac7bda *inst/doc/introduction.html
29b38cb8349ff894db3d067ceb50ddb1 *inst/doc/introduction.rmd
2f7a9e570c4fbe468cf5c706fc89d116 *inst/doc/proteinQC.R
14c8581ee41e2aad7da5d815738bcbba *inst/doc/proteinQC.Rmd
805c444581427de71174e834d720ded1 *inst/doc/proteinQC.html
1f0352408c97af7d68295f8cf8f571e5 *inst/extdata/CosMx_DBKero_Tiny/DBKero-polygons.csv
1fa29ed1151021f1e1bf3b17eebcd908 *inst/extdata/CosMx_DBKero_Tiny/DBKero_exprMat_file.csv
4595c9fdbc8fb8e1c80aed1db56fb50c *inst/extdata/CosMx_DBKero_Tiny/DBKero_fov_positions_file.csv
7cc46c5cfbb0ad46202ba6882ee87347 *inst/extdata/CosMx_DBKero_Tiny/DBKero_metadata_file.csv
fb56ccaaef4585eea0c86662ae9c5553 *inst/extdata/CosMx_DBKero_Tiny/labels_tiny.tsv
9040eda53116e965ec230ea09f831dc8 *inst/extdata/DATA_README
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72572418d70e53208841bb48a71a279c *inst/extdata/Merfish_Tiny/HumanUterineCancerPatient2_cell_by_gene.csv
00377a8239ae749250d5f57b80b0240b *inst/extdata/Merfish_Tiny/HumanUterineCancerPatient2_cell_metadata.csv
22f9c2426520ff4be052cef3108b2858 *inst/extdata/Merfish_polygons_h5/Liver1Slice1_cell_boundaries_feature_data_1.hdf5
3f89575b03b801b741622e1630404bae *inst/extdata/S0_prot/S0-polygons.csv
40fe437870b2cb37bbd20fdcaa3efc1f *inst/extdata/S0_prot/S0_exprMat_file.csv.gz
1f0280efbcacabe5ea92fb5626631249 *inst/extdata/S0_prot/S0_fov_positions_file.csv
36152aa8a7ae2561e1fbfa23a3b10e32 *inst/extdata/S0_prot/S0_metadata_file.csv
1a82d2482ac6c1abc5fada2e6e3f097f *inst/extdata/Xenium_small/cell_boundaries.parquet
456d98ce1c88ccbf7d1a769a8afece18 *inst/extdata/Xenium_small/cell_feature_matrix.h5
92f8baa0b63afd64954e9c4e7f057edc *inst/extdata/Xenium_small/cells.csv.gz
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dc0c520250cfc8c38f182c824b3dd57f *inst/extdata/Xenium_small/experiment.xenium
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6f501bd83223caa861715b02166a435a *inst/extdata/metadata.csv
d5fc6648424df93f47d39512008be9be *inst/scripts/arrow_install.R
6a6ebb7876760b479802a1007ab475b9 *inst/scripts/datacreation.R
7222bfdfbd49bc8d52e26c65b6a86d23 *inst/scripts/labelsfunct.R
019e907b04d8873fff9438a1bad395b9 *man/addPolygonsToSPE.Rd
540c01c71d905b13937b87201b607b2d *man/computeAreaFromPolygons.Rd
92f85416d3d99dcaa81c35f319dd0a3c *man/computeAspectRatioFromPolygons.Rd
d951eb086363eb5df5cb754d16b713f2 *man/computeCenterFromPolygons.Rd
2dd426e2d6fb1f8583823b69abb26f38 *man/computeLambda.Rd
b6afad1524f5b19a31d16183d2d776cf *man/computeMissingMetricsMerfish.Rd
0f0eb6eee74956d495217f994dfbb18b *man/computeMissingMetricsXenium.Rd
0ecbcf099b450ceff26fd8ab02d4c900 *man/computeQScore.Rd
aa0c207a721a4c593f72b61857629b25 *man/computeQScoreFlags.Rd
95be31a10919112891e0491d33e56a26 *man/computeSpatialOutlier.Rd
68b4bd146c7694c2bc3dc817121e04d8 *man/computeThresholdFlags.Rd
af5de4c5b261aa996823ef208b12db1a *man/computeTrainDF.Rd
4ee6303491ec3e724b47c560e1c0e0ec *man/createPaletteFromColData.Rd
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53fb0f80ef466d678700d0ac22859f09 *man/dot-addPolygonsToCD.Rd
59d22f8924e13024639768280ea3982f *man/dot-centroid_image_theme.Rd
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64355e45a26ddabb54fa3f6b18549cf7 *man/dot-computeBorderDistanceCosMx.Rd
4b238a123c38b205e0603dee465dce71 *man/dot-computeCosmxProteinTrainSet.Rd
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4793a84cd2659ab632d12bc8000d9221 *man/dot-setActiveGeometry.Rd
56aae119577bd670656b772dd9cec0a1 *man/firstFlagPalette.Rd
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63fe8b77f72caf64fbe284a0dca111ad *man/plotCellsFovs.Rd
8af1670de3aa98942c2e5d037cfa471f *man/plotCentroids.Rd
1ee3bf9a1d2b26bc8fd5f2f8b52aa752 *man/plotMetricHist.Rd
29b6217c5cd1ef6df68d1bd1b097eeed *man/plotPolygons.Rd
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0c76bb21e195cf68265d315a0c05fa4b *man/plotZoomFovsMap.Rd
eeecd780116aa0aebed134cd5b38bade *man/qcFlagPlots.Rd
d064d92eeeeeea9e18a8a10599972e4f *man/readAndAddPolygonsToSPE.Rd
d894cd2824eb56511edf748e121c5cda *man/readCosmxSPE.Rd
623c02418cf882b533adce879c0774dc *man/readMerfishSPE.Rd
422a2de192442c1130375fea9fcf18d1 *man/readPolygons.Rd
7f78d97b016fe724e5d98564a7344992 *man/readPolygonsCosmx.Rd
c5c1c5e5677b85a94ad7442bfd8c3b3f *man/readPolygonsMerfish.Rd
484edcfd8d16028c600555f49f4b3eb2 *man/readPolygonsXenium.Rd
70137c7e591866880a00846304f4fb24 *man/readXeniumSPE.Rd
cdbaf156d714b4bbbb825b710cb83750 *man/readh5polygons.Rd
8e349e4ee3b054fdd70b4ae289efb9c0 *man/spatialPerCellQC.Rd
cf472ef324b01de3044dc1d90fb973ba *man/trainModel.Rd
34687ac8d874cf811c6040a20cb85c60 *tests/testthat.R
a32dfe3489abc1d98331fe101fc925d6 *tests/testthat/test_QScores.R
29b38cb8349ff894db3d067ceb50ddb1 *vignettes/introduction.rmd
14c8581ee41e2aad7da5d815738bcbba *vignettes/proteinQC.Rmd
