9be8244b3dc4f1960d5bf6ae268126b9 *DESCRIPTION
b6e64f7366241b4e9828327a42d383ec *LICENSE
96a9c1ee5297a2fd83a5e9d958b908e6 *NAMESPACE
f37ed4613106a9666a76c2bd0633ecaf *NEWS
b0c107cdf0726ba02b7f3fd2104524bb *R/classes.R
fe4a5d99fc444241efe5bb452c92531b *R/cluster.R
43aa9a01bbe659f917c4c5806859fa9e *R/correlate.R
9c12389a425ca4282c94c7feb4749fc6 *R/decomposition.R
f91939335539326894d5161a3985e28d *R/gc.R
bdc1d950406c947687af8d84c5891106 *R/granges-utils.R
457184a908a3275604d595ef5781347b *R/hs-chrs.R
9119dd8aaea2f797a0a37953ae88dcfe *R/kmers.R
e1a7c2e0035e637d475aafdffc405583 *R/motif-matrix.R
35ea46f378c2be50b6310c84f714f473 *R/mutation-context.R
bf3a62eac6158a2482482ba9fbe8d156 *R/mutational-plots.R
01f7c7e0277ef7d6e04a24ded44cfe95 *R/mutational-signatures.R
a64d42554e8a72626f4f9e2077c34d47 *R/mutect.R
6c8289dc238636cb46f8f8699e034203 *R/normalize.R
5de0d186505d99c580876bf491d9e767 *R/number-signatures.R
84fb44f9c30f3152bf0d808562292e73 *R/rainfall.R
a90312d126f46b59dba3e05f806536cf *R/signature-plots.R
c4adcb4feec1b7c0a101cd40a6b15a5c *R/utils.R
b7458bcbaa3d5b0aec2fe80f4afc9aad *build/vignette.rds
bff61d57d934fc9912dec3d07e087727 *data/kmers.rda
7a5f724eebe25b43eeebe8b2a57105fd *data/sca_mm.rda
9375d90a485ec3890a85ba4a0f4983d6 *data/sca_motifs_tiny.rda
2b9c7fe88c20d99012ea31895bf61a6a *data/sca_sigs.rda
839fd02d7a509d45ed3fbcfe39a69bac *data/signatures21.rda
3838a643bf73b846d76700ddd66a57c3 *inst/CITATION
5b85ed03bf97c02987e901d2e19fab65 *inst/css/bioc.css
641c5b660adfb68ab02254bca669053c *inst/doc/SomaticSignatures-vignette.R
f2902b945ed7eff8b87c0ef1eec39092 *inst/doc/SomaticSignatures-vignette.Rhtml
0ce9a1197751ce06203269a0383e3fe4 *inst/doc/SomaticSignatures-vignette.html
73de90bdd2ad1fed982ee58e57a0ee8a *inst/examples/mutect.tsv
a531303bd76d4ccd1cca90cb554884f0 *inst/scripts/kmers-data.R
96531a80864df98c3294d5c9b74d99cc *inst/signatures/signatures.txt
86513970673a90f01806b231d6d0ffbb *man/MutationalSignatures-class.rd
210a3b6d6a717e67a0d0358942975eb9 *man/SomaticSignatures-package.Rd
50ec212de431833ce37fd504c7398ab1 *man/cluster-spetrum.Rd
4caca6cfa1da46478bc71f1accf5d4a5 *man/decomposition-functions.Rd
2e2cb31d927ebaf94a25686af85a48e7 *man/gc.Rd
3b4354d27c68c36a6134aff82d4ca1b2 *man/granges-utils.Rd
5a79cf857895836dcb109d21320d2fa1 *man/hs-chrs.Rd
60bb332e3323e5e2c796ad256d391a62 *man/kmers-data.Rd
af80ac7c62866059c1551d9d00520d55 *man/kmers.Rd
166f78181b67921744221dcd509145a4 *man/motif-functions.Rd
055656437f8fc7b6ed75d998ae1cd4a0 *man/mutation-context.Rd
4815a9b9129021cdf48217524e6d8932 *man/mutation-distribution.Rd
a7e479e24ad65b00cfc80cf93d4ac777 *man/mutational-normalization.Rd
e367080dc242a3e54f2cfb79dcec2fab *man/mutational-plots.Rd
3233c92bfef9691d08a8fd4ec3250777 *man/mutational-signatures.Rd
fca6cc4c9c8d1f9c7e74b81f079e1d2d *man/mutect.Rd
a0f17df507ec389cc7818c94516364af *man/number-signatures.Rd
8363c8f9d8f9996d490300f25379c4cc *man/sca-data.Rd
490581c9c779387f157e69e3ed6ab95c *man/signature-plot-functions.Rd
15da3c58ea3a5a456df54d92b599fd61 *man/signatures21-data.Rd
d61ce6e09521fb2e6d15366672074f1b *man/utils.Rd
737ad7d0509e94d0c2926aa516070a6d *tests/testthat.R
c892c7961cc2852dde6377dab3dab807 *tests/testthat/test-SomaticSignatures.R
f2902b945ed7eff8b87c0ef1eec39092 *vignettes/SomaticSignatures-vignette.Rhtml
e2a14c617036fdb3924d9425480b78cf *vignettes/SomaticSignatures-vignette.org
d0da56797b220012ff30c7a8bdf4cc29 *vignettes/bioc.css
3e80ee18f3fe2b8a8cb553001769bde8 *vignettes/references.bib
c7f9cce16b75a01391832b10d242c5ab *vignettes/references.html
