Package: SeqGate
Type: Package
Title: Filtering of Lowly Expressed Features
Version: 1.20.0
Date: 2021-01-22
Authors@R: c(
    person("Christelle", "Reynès", email ="christelle.reynes@igf.cnrs.fr", role = c("aut")),
    person("Stéphanie", "Rialle", email = "stephanie.rialle@mgx.cnrs.fr", role = c("aut","cre")))
Description: Filtering of lowly expressed features (e.g. genes) is a common
    step before performing statistical analysis, but an arbitrary threshold is
    generally chosen. SeqGate implements a method that rationalize this step by
    the analysis of the distibution of counts in replicate samples. The gate is
    the threshold above which sequenced features can be considered as
    confidently quantified.
Encoding: UTF-8
Imports: stats, methods, BiocManager
Depends: S4Vectors, SummarizedExperiment, GenomicRanges
Suggests: testthat (>= 3.0.0), edgeR, BiocStyle, knitr, rmarkdown
License: GPL (>= 2.0)
LazyData: no
biocViews: DifferentialExpression, GeneExpression, Transcriptomics,
        Sequencing, RNASeq
BugReports: https://github.com/srialle/SeqGate/issues
VignetteBuilder: knitr
Config/testthat/edition: 3
git_url: https://git.bioconductor.org/packages/SeqGate
git_branch: RELEASE_3_22
git_last_commit: b9fa51c
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.22
Date/Publication: 2025-10-29
NeedsCompilation: no
Packaged: 2025-10-30 06:27:59 UTC; biocbuild
Author: Christelle Reynès [aut],
  Stéphanie Rialle [aut, cre]
Maintainer: Stéphanie Rialle <stephanie.rialle@mgx.cnrs.fr>
