e9c5dd80c1c4f3794149e85a3c917cea *DESCRIPTION
3806e6a9379a8fb4ca923f57ad23e44f *NAMESPACE
4f0cfe2212526ecf2d484b7105c7e3e5 *NEWS
d98e0c4495d287b29daa438213e61fd6 *R/AddValue.R
b9383902bec2bcc4f5cd3ad5ab5be1dc *R/AllClasses.R
76c907d756fd41c990d07ac62d8e4528 *R/AllGenerics.R
6e3439faabafa8675ab542b763b91d88 *R/ConvVCF2GDS.R
75ef10c6ce33d938bac2021ff0490cfb *R/Conversion.R
d05bca33c0b248b2dadcbcb0bb618e7b *R/Internal.R
dbec51c92d985c473968cf9c835a42fe *R/Methods-SeqVarGDSClass.R
5808d3383efc767d5cad9cef938bb0e5 *R/Methods.R
c5ada30620b705855c262609712ecb27 *R/Summary.R
2268cb4eb4c687779ac25cc93b54cd0b *R/UnitList.R
47fa1796540a45b41566bbcb386ea29f *R/Utilities.R
af8b3689f451fc9d2d606ea23389cdf1 *R/UtilsExport.R
f3fbf8b8794b6bfdc133a4a0c52466bf *R/UtilsMerge.R
700a1958d6ebe07b65fd828c9e165f1a *R/asVCF.R
64c44a164c5f6c3bb192419f41f2e46e *README.md
1ddec21f0c1bc8e8536f1d9a8e910f16 *build/vignette.rds
692623e629bc74bff8b33ccc8a9d9269 *data/KG_P1_SampData.RData
2af23b289bd04dfde5f7f45ea6725a8e *inst/CITATION
23af59bd6466b22cf9b89612222f3194 *inst/doc/OverviewSlides.Rmd
5cff30033fb8ea58fed065dbd9f98f17 *inst/doc/OverviewSlides.html
1090c1ca90a04afa549dc89d68baccd6 *inst/doc/SeqArray.R
f05a124e83c8cc23d11deaf39636b11d *inst/doc/SeqArray.Rmd
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ab86104e059edb0ceea98977aec9994d *inst/doc/SeqArrayTutorial.R
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111acb9c48ebfc7fbfcaff1fe6e87522 *inst/doc/SeqArrayTutorial.html
f634caf6278b05f6023cc23bcf7d9e1c *inst/extdata/1KG_phase1_release_v3_chr22.gds
2144679bb67fc7d30751e61c1d4cce83 *inst/extdata/CEU_Exon.gds
1dee226aad295e72467948b4ae62caf5 *inst/extdata/CEU_Exon.vcf.gz
0978a3ec42efe444574964a49b0843bd *inst/extdata/CEU_Exon.vcf.gz.csi
f73abdcdb92c98ab3dbb6ca8b66fe6ba *inst/extdata/Imputed_dosages.gds
39f29f05d541afe27fda50ae5cf082ea *inst/unitTests/data/Valid.RData
95c59c629b661e9f466d43abd8064a7d *inst/unitTests/test_asVCF.R
0d52a8c2cadbc0fc6ee3ccdabfc924ca *inst/unitTests/test_c.R
9e83fa6604e1e2f93b33647b34f2db3a *inst/unitTests/test_cpp.R
c78408dc793068252f08d9a9e979cd8f *inst/unitTests/test_examples.R
85270139310379d3a50c55b814b2dd12 *inst/unitTests/test_func.R
e1ad93ee3ef81e47f524f07bee0fa49f *inst/unitTests/test_utils.R
ce7571728238a97ad521678b69bbf1fd *man/KG_P1_SampData.Rd
9db5c1fe921ee78fad0d6b90dd55549d *man/SeqArray-package.Rd
fdc5366b4fd272eac12d3821f885be58 *man/SeqVarGDSClass-class.Rd
c270079b9ee31adf65d521e033cd56bb *man/seqAddValue.Rd
14aa302582869c0222aab364b2ea71a8 *man/seqAlleleFreq.Rd
63a38c8dc75117995f67a8f58f87c140 *man/seqApply.Rd
d6030fc6c195eaaa15d2277f62df6f4d *man/seqAsVCF.Rd
f4e03762478db02de62f9a6507a51599 *man/seqBED2GDS.Rd
04bbe2ef6f3b365ef4e0782a060b6b09 *man/seqBlockApply.Rd
44d8bdf24fded0fba3e91dd867cb9c20 *man/seqCheck.Rd
2f0624d0227715cafa9b973364dc3010 *man/seqClose.Rd
8afd3fd4a44b577b36eb7ad64334560c *man/seqDelete.Rd
a7ab9ef8b3e79fb1ffcd37dff20c1171 *man/seqDigest.Rd
6016b444c7490cdd936a0fe48a28ab42 *man/seqEmptyFile.Rd
df1cc799b9580052a2e1eb633ac296b9 *man/seqExampleFileName.Rd
c1e12bad8c153fa62e4fdb408fdf76d1 *man/seqExport.Rd
12ed6d5d6f5ae47482158637c38d2c38 *man/seqGDS2SNP.Rd
2cb25ccd99397cbad400db1b631de467 *man/seqGDS2VCF.Rd
1c2c2c7b277e1bb4747555d45b79a216 *man/seqGet2bGeno.Rd
203706e6142cce09f3c51d3b9ee1b0f9 *man/seqGetData.Rd
bde91b89fc72c266a5eb9df0ecdcb0f7 *man/seqGetFilter.Rd
301938d8b6941fa7c4404b511f202ed1 *man/seqMerge.Rd
7ca8805b48e19abcd20cc15fed2cb7d9 *man/seqMissing.Rd
19948d929f6339a51d93dc56b7e5712e *man/seqNewVarData.Rd
86042f3745249146344563e443013ca7 *man/seqNumAllele.Rd
112f0b86954df8a73d7c660521e49232 *man/seqOpen.Rd
c691178131b775afc37ed1e94a492232 *man/seqOptimize.Rd
e965c88262b8d20988e717e2ad4e8684 *man/seqParallel.Rd
e13ddebc558da3bb199ffe9c1540685a *man/seqParallelSetup.Rd
53218af974047f227cbb81f1348a3925 *man/seqRecompress.Rd
e2a52d36afcef656cf20df3007822110 *man/seqResetVariantID.Rd
113001d529d4950097266e8bf1f8cd9d *man/seqSNP2GDS.Rd
ad1c6f820cbe3387ce158138c784ee0a *man/seqSetFilter.Rd
857fb530b8a28c1eb0ebe11a0f2dfe90 *man/seqSetFilterCond.Rd
c79db406207a9b87609eaaed21865a42 *man/seqStorageOption.Rd
5d0a2ecce6f217092bbd18086d2d2082 *man/seqSummary.Rd
9a1fa43c75a99c3bc469484c75d19028 *man/seqSystem.Rd
c1ec5b62b7d6b3478aabb1f8fc1ca0fd *man/seqTranspose.Rd
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3fa569e12eeb22e632fb8245ba75f7e9 *man/seqUnitFilterCond.Rd
fa63b1da2f6b1e8929917517ebcd5640 *man/seqUnitSlidingWindows.Rd
9fc06f7d2b85a3e698be0a9483706e59 *man/seqUnitSubset.Rd
ff35d492b81d74c8d5fb0f252699852e *man/seqVCF2GDS.Rd
fc4fddac91014207e95d48550b0369e0 *man/seqVCF_Header.Rd
21fe99f72dd7b6c4011c216c4f207685 *man/seqVCF_SampID.Rd
48f60af6d2505242c89cf8e83038c187 *src/ConvGDS2VCF.cpp
27f014d7938fb65d94dcfd931f2c79f4 *src/ConvToGDS.cpp
d4249a1f90067066c2f0c837a73af126 *src/ConvVCF2GDS.cpp
8dec3f8b01e43e86262d1093ab659566 *src/FileMerge.cpp
85da6fdc1ed469211f8308416681ed64 *src/GetData.cpp
eee84567dc55fa5064c28c10c9935ec0 *src/Index.cpp
f2b7a5adff05280f5ac14665d66a47c3 *src/Index.h
ec4b95209b2d7abe10ecfcc875a60f1e *src/LinkSNPRelate.cpp
1ed05138de7c7dfd03c07c8b0a8b731f *src/Makevars
0a22e83ea421613ef1b57e1f600547f1 *src/Methods.cpp
adbe9e5d90fd0de31201ae50a846aecf *src/R_SeqArray.c
a0445e861388d95b197d4d3ccc5ecb3c *src/ReadBySample.cpp
7f143c2a3ba458c420d3541ad6f232e5 *src/ReadBySample.h
6599c1daf0303419838463a11e0a429f *src/ReadByUnit.cpp
03b99d8a26ce161dd939d46350d93033 *src/ReadByVariant.cpp
a913372970081bdc436a1e491b7d2e28 *src/ReadByVariant.h
aa115a2ccba38b21d002fb737f77e111 *src/SeqArray.cpp
f3e1a2233389243c874f34bb06f500f9 *src/pkg_test.cpp
372b9b3760fc945aba6a3927bb0ac834 *src/samtools_ext.c
03f06fb7a1a8e156e96165d7ac9311b2 *src/vectorization.cpp
226d6f87fd769b42a7764b9f39154abf *src/vectorization.h
ee5a9fdf768ac7861fdf9a9c0e171192 *tests/test.R
23af59bd6466b22cf9b89612222f3194 *vignettes/OverviewSlides.Rmd
f05a124e83c8cc23d11deaf39636b11d *vignettes/SeqArray.Rmd
82339caccd3a4074de9c8662834a2c23 *vignettes/SeqArrayTutorial.Rmd
37a2a7baf8a9c0d56cbcb2358dc15d28 *vignettes/benchmark_rand_samp.svg
1399e727cfe248f7a8f898e42ffe71be *vignettes/seqarray_bib.bib
621d59fe6ecb5f3134fed47477750cc6 *vignettes/seqarray_workflow.svg
