7f5e458b70c77ee63fdbd4920223b2d0 *DESCRIPTION
3b3447f0802aa71af7ce8fc935a9538c *NAMESPACE
b4906f272f82b785e9a6cd3f917ed37b *R/data.R
22eebfe5cd3be0905c3cb453bc116dbb *R/k.selection.R
2de9fec05dac53f52baef6899ba16dc8 *R/knn.and.statistics.R
2b9544e13f45b0604720e1cd3aaefb51 *R/post.processing.R
8d382631533efe51632e28cd5c5d5b34 *R/process.files.R
01fba9a39f1844fc6188363c05fbc1eb *README.md
43e9acdf35c6c3636fb560a918ae0928 *build/vignette.rds
f57b1fb0a53520c9431dbb95e59b440a *data/bz.gmcsf.final.norm.scale.rda
6d23499e2a424b7f29a63c90fb58b292 *data/bz.gmcsf.final.rda
ca2c057dc5f742565e1f399598133119 *data/exist.rda
dbc83c2a776dc4164dab9c165f4a84f4 *data/funct.markers.rda
0884f6944e2e3ad6f270aa34a3927096 *data/input.markers.rda
3f91721c6033f16dbf1a250960ad1926 *data/markers.rda
d2a2264a5d64314628fa2009cf5cdf6d *data/wand.combined.rda
9495e5cc26ccbdddb45189fcf96e4638 *data/wand.final.rda
3697c72832f73ad9f02180b3487aa3ac *data/wand.ideal.k.rda
1b52791feff1efc9c37bb5097ff9b780 *data/wand.il7.rda
ba46796b9d989f41c2f931a6446e01f5 *data/wand.scone.rda
52a51a0e0030f31412c63fcb5050e9f0 *inst/NEWS.txt
867943e68d6b31927e73c43df517a1a5 *inst/doc/DataQuality.R
90ff93c879ab0af7ef96df5834c28adf *inst/doc/DataQuality.Rmd
a7b66f8f99a3cac0a07e13861db8e3c7 *inst/doc/DataQuality.html
00c4525ee22a42c73fc06aed5bb67d75 *inst/doc/FindingIdealK.R
f2af2ede70e29446666b4db3aeb939e8 *inst/doc/FindingIdealK.Rmd
18dbc96940672082fcc5473b74dc589f *inst/doc/FindingIdealK.html
57021c69cff087e1ae8e02bfcb02896f *inst/doc/Step1.PreProcessing.R
325aaa21adc364c2c633afdd40ef3b94 *inst/doc/Step1.PreProcessing.Rmd
6059b30818ddc7ef95b8a0fe9fc100fa *inst/doc/Step1.PreProcessing.html
59cf7f05827f8f6118f8987dd266ced7 *inst/doc/Step2.TheSconeWorkflow.R
d0f14f5afb3f25783990fb2b34e34167 *inst/doc/Step2.TheSconeWorkflow.Rmd
da86d365277e600bde005aee6662115c *inst/doc/Step2.TheSconeWorkflow.html
bd0b5cdc242e08df7d5adc193c28154c *inst/doc/Step3.PostProcessing.R
705564d45dfb55c87c7cac5dc3c30b7c *inst/doc/Step3.PostProcessing.Rmd
c40c6a97c90695b464967c813a544605 *inst/doc/Step3.PostProcessing.html
3322c978cd06a34e79c9ee1d0fe38862 *inst/extdata/Bendall_et_al_Cell_Sample_C_IL7.fcs
c07f384aada4dd6d1bb284e2c0da84c1 *inst/extdata/Bendall_et_al_Cell_Sample_C_basal.fcs
3910a68ea78d0a9926e11cc708941493 *inst/extdata/markers.csv
1597ad62612cfddd2702c1be997ac56a *man/AddTsne.Rd
905131e1f4a119b66c5fa7d63d13502b *man/FcsToTibble.Rd
0186118b5912521795435e44f9384654 *man/Fnn.Rd
127093885e7e14eb0c2e5f2b80ec79b5 *man/GetKnnDe.Rd
4a6cc6222a0ed394345a620d5b351769 *man/GetMarkerNames.Rd
00c112ae7058667fc8cb0623b12525ff *man/Impute.Rd
dedd27d307166a4af113f66c382af1f4 *man/ImputeTesting.Rd
9946c68093db965f1ad698b199357ac8 *man/LogTransformQ.Rd
0411cfc6a37643aa454b0a3decc58565 *man/MakeHist.Rd
5d7cfc3670f023add31a9cfc86683fb0 *man/MakeKnnList.Rd
bbcbe501ea6f3ef10ad5db8d90d13a04 *man/MeaningOfLife.Rd
423b81b5594785d98ea855c70e2cb304 *man/MultipleDonorStatistics.Rd
3d3eb6122cd5643bf32ac84ca2bac4bc *man/ParseMarkers.Rd
91ec1a17fe650abf1c38f05debd16d0b *man/PostProcessing.Rd
3472844af3664640cc7f49478a969d6f *man/ProcessMultipleFiles.Rd
7b94531bf73a836929b8b3be1f1ee1aa *man/QCorrectionThresholding.Rd
eebf2eacf0a2365d88584e543e40b099 *man/QuantNormalize.Rd
40432979a373cd007722e752e1a333a5 *man/QuantNormalizeElements.Rd
a9aa83585834d36f69019ae6372e9505 *man/RunStatistics.Rd
1e837f9eff7b9ef69b6bbff4dc418978 *man/SconeValues.Rd
35caecda8740a44763c0b90d906dc135 *man/SplitFile.Rd
8fc2e27d6a5bfb51e3f0869a07d8226c *man/StringToNumbers.Rd
80c813652979babd62544de7621c4523 *man/SubsampleAndTsne.Rd
4797e86755d7727c5d060ee6b67c0ede *man/TsneVis.Rd
b275fbf2236cdf85cc94d2657acb6a9c *man/bz.gmcsf.final.Rd
0082c73140403daac56985b2048a2e4a *man/bz.gmcsf.final.norm.scale.Rd
135b387977ff8a33585cb7a885898734 *man/exist.Rd
edcd256cb1c4dfbf30114f050afd46ae *man/funct.markers.Rd
b2ed52a76bfa439d7baf611b764ca2d2 *man/input.markers.Rd
81fc689763bacfc6d1bd9cfd2e82521b *man/markers.Rd
dd2a9049039fb23bfbcd2453e1e5b4c4 *man/wand.combined.Rd
f5ce77a32c9ec6326deaf3da0c585efd *man/wand.final.Rd
5f0634d9f1c33c7a03d862c4df9c6c62 *man/wand.ideal.k.Rd
ef4b4b680c9aee9f0b11666cedf81dd9 *man/wand.il7.Rd
8727c06079509448a8f74ebda6a171c3 *man/wand.scone.Rd
f62e9709fc08e7d23036fb9cae765676 *tests/testthat.R
e24fb8727a24d074096534fc5abbafe0 *tests/testthat/test.file.processing.R
2cd29b943c1f66c9eca3fe8eb4ed26d1 *tests/testthat/test.k.selection.R
28a76248da42b9ee0693cf1006d7bdb9 *tests/testthat/test.knn.and.statistics.R
51f6c05d6237d5ddea836dcf8a7cf712 *tests/testthat/test.post.processing.R
90ff93c879ab0af7ef96df5834c28adf *vignettes/DataQuality.Rmd
f2af2ede70e29446666b4db3aeb939e8 *vignettes/FindingIdealK.Rmd
325aaa21adc364c2c633afdd40ef3b94 *vignettes/Step1.PreProcessing.Rmd
d0f14f5afb3f25783990fb2b34e34167 *vignettes/Step2.TheSconeWorkflow.Rmd
705564d45dfb55c87c7cac5dc3c30b7c *vignettes/Step3.PostProcessing.Rmd
ffdd82733411bfd1abb0ea05ebf117c1 *vignettes/modified.markers.csv.example.png
805151f17054ab01683601ff292bf438 *vignettes/original.markers.csv.example.png
88d0dadd9ddccaf4c4c11e2cf62d1923 *vignettes/sconify_proof_of_concept.png
ef2668364afbf760635559ee2c514cb4 *vignettes/sconify_visual_explanation.png
