385f47447f148291f8594270a9da30b8 *DESCRIPTION
0c76190d64ffe66cc05ab0c31da03342 *NAMESPACE
8ae5e571e37d273e5478a7015c23a007 *NEWS.md
671835bb9b01d845a1a47be64ea701a7 *R/AllClasses.R
41599a8e45cbe7a2cd25166119867dac *R/AllGenerics.R
1e7f87e96c324accfe74a043409ca09c *R/auxiliary.R
604e0565d09261f90866f24eb27653e5 *R/factors.R
8b69aac06f314c71ccd811c03f2a42cc *R/features.R
2a04f929794a159e1e4649aa33e83378 *R/methods-FactorisedExperiment.R
bc322de03f02523af5cfcfe64835c77f *R/methods-ModularExperiment.R
5c277282a6592b4ab6ab9e649440bb28 *R/methods-ReducedExperiment.R
55b287a3dad3fd4c359f47ad9d0016f6 *R/modules.R
cb4e82c9cc351bab1a995fcc35cac14f *R/samples.R
dadf2d978162381608fd0da580685a01 *README.md
55bb62c61e9ea311b89919c33ae83c6e *build/vignette.rds
a2bc435e87d48e4937ae70609b9e96d8 *inst/CITATION
7a2387625b58f633b6ad2884ab66c876 *inst/doc/ReducedExperiment.R
9e7f29e8d57b6966f1f792d32495b809 *inst/doc/ReducedExperiment.Rmd
6b74eeeb24d99f85eaa69fe456707f45 *inst/doc/ReducedExperiment.html
a4ed3e03da70a6b35b6fd6967dbbdde4 *inst/docker/Dockerfile
31d72a2b4620894e882a21b7163b4996 *inst/extdata/biomart_out.rds
619eb0c32b1dd657f2ebb023bb4c2c5b *inst/extdata/msigdb_t2g_filtered.csv
819f3105dc72ac4bc9570e4785ba0ff9 *inst/extdata/wave1.rds
ea6406529d76eb776fba1e5688bc5f32 *inst/extdata/wave2.rds
5347b5638b8bca4a5a5c6930bc33cf37 *inst/scripts/biomart_out.R
5e5770cea86b7498ec80266ce245d889 *inst/scripts/msigdb_t2g_filtered.R
aa571bd889835afbe9628bf2374028af *inst/scripts/wave1.R
ba52e0c6bcf414e7f04b53a55008c08d *inst/scripts/wave2.R
998cb3e34a7dc78a0e7a9db38e2d1855 *inst/stability.png
614838d88004e31847ad9997436b454e *man/assessSoftThreshold.Rd
b70eabb2f53fcf439eda21d5a21bde28 *man/associateComponents.Rd
d0dfd4ff2b1a0da98051a6cec13f3ef4 *man/calcEigengenes.Rd
a5eec7c0629308f5ef001879851e8f94 *man/cbind_rbind.Rd
52163492f193a0d9599a9005ef3a36d3 *man/component_names.Rd
a1b23038550487ea2740ac88618a6d39 *man/dim-ReducedExperiment-method.Rd
861680482ec1a7f88344c7a648a7259d *man/dollar_names.Rd
c37d31e599d3ba716333cf3efa93a71d *man/enrichment.Rd
e0a2f12562f54f7b6ec5e40e3f691bf8 *man/estimateFactors.Rd
c266cca7087cf5de5200469a591033d2 *man/estimateStability.Rd
5a2537ad4feeb8a696a7f347af5e183a *man/factorised_experiment.Rd
abc4953e4156055e46a3101ec6a77cbd *man/feature_names.Rd
1e9764de8337193e061d623d3cf2e61a *man/getAlignedFeatures.Rd
d990c51e5c374d0bdb51e83b20ae39c2 *man/getCentrality.Rd
c506597f210111e3c360d306cb7ce78d *man/getCommonFeatures.Rd
82079c5a23dd611fd49d2d217142764f *man/getMsigdbT2G.Rd
d09d061d2524febfb29980b40b90045f *man/get_gene_ids.Rd
442e48dbfb0d80eabfd68c40e522dcee *man/identifyModules.Rd
69e321142253b9fefea8759c467ad9ff *man/individual_dims.Rd
155d66f3f74413e741a54f84af28294a *man/loadings.Rd
a190746e0bc83e682b4673355994fae2 *man/modular_experiment.Rd
35bc7ec829b7ce3e9b40b6bc08476104 *man/modulePreservation.Rd
4edf03587bb7e2781e06bd91580d18ac *man/module_assignments.Rd
6605c3cb5850165174aed0f4c533d7ac *man/module_dendrogram.Rd
9aa5030f5304895c42ee79bb845614a1 *man/plotCommonFeatures.Rd
1282224e6b7b451ab55a630bf22ca9a6 *man/plotDendro.Rd
370bcf0f815f6478fc597aaafbd5b2d7 *man/plotModulePreservation.Rd
96f4479c2e209f674c2cc149928b47af *man/plotStability.Rd
8efd5006ae30802ad93dc53427b381e9 *man/projectData.Rd
869e415a406c1f0fbf88b5c305a76b1c *man/reduced.Rd
786d1857d8c10c1ae136d0e0c2b41028 *man/reduced_experiment.Rd
8b5bdf69a82ee56469819abfbd8f1ba0 *man/runICA.Rd
99d3661b03cfadba5a91be9be34fdbcf *man/runWGCNA.Rd
f98aab833960072b0ec8cb025206b8eb *man/sample_names.Rd
1e014be592e2be48c076cfc23861c7ef *man/show.Rd
062e86522c1b8bee1b57488aaba5212d *man/slice.Rd
7f6159b3e3d9685335b3bca4e2f1d2d3 *man/stability.Rd
84c388c8249c1152cb43a52b51387028 *tests/testthat.R
efeb889e1c33ee5b46a47945122595a0 *tests/testthat/test_FactorisedExperiment.R
95b3a0de63a6bba14864069173fb80cc *tests/testthat/test_ModularExperiment.R
e5021c8778f938f6c12daec3c497526f *tests/testthat/test_ReducedExperiment.R
1fb4515ca40ae3310df249461405f524 *tests/testthat/test_factors.R
40dbf6df445040dcd799b69a3ccf43c1 *tests/testthat/test_features.R
df0249629b1034a8569e707754adf0d8 *tests/testthat/test_modules.R
7414fb02cef285714f703c311786bbf8 *tests/testthat/test_samples.R
9e7f29e8d57b6966f1f792d32495b809 *vignettes/ReducedExperiment.Rmd
