86660e26ac82df1a9b9616871ff33def *DESCRIPTION
c56c0abc2f90337dd9220282e574d53c *NAMESPACE
3b43f888eaa6e3d85b8965384e527f02 *R/AVS-methods.R
cbf34c856d84a332a6a9ddb42d10a573 *R/AllChecks.R
7810bb331c58c5939a34a457c6231d84 *R/AllClasses.R
3ed0f5700fb3290bf7e0ce5111d27515 *R/AllGenerics.R
1504ad94efc50476cf858708dd8419b5 *R/AllPlotsAVS.R
44f19996a644d97c8f4972d6fc8d945d *R/AllPlotsTNA.R
7369be0a1c7667177bc669cc36bfb885 *R/AllPlotsTNI.R
12301b7fe1781199ffa27505a837f9ba *R/AllSupplementsAVS.R
46980f96743f404edd1ddc65178516f8 *R/AllSupplementsTNA.R
5b60a8b8223b10522fb8c7ef201eedd3 *R/AllSupplementsTNI.R
7db2395cf37af512bf2f8de8e4fbf383 *R/ClassUnions.R
110c5fcfbbbb0a82238966024011e94f *R/TNA-methods.R
73dbdfbb27c8a9e53ea247b45ff0ce78 *R/TNI-annotation.R
2352e07c3df46de74aa030000c12420b *R/TNI-methods.R
61ae9944a24c16f5e41762767fa76e8e *R/TNI-pruning.R
63b2a4cacd53626168fcb0bb889693c1 *R/TNI-subgroups.R
e255493f1776272b6c04095011043b82 *build/vignette.rds
ff3a7de37e7644f33a118d574d27adfd *data/datalist
77d4bc90c14bb9a8833fb993dc213a54 *data/pksData.RData
36ed1c9c1cda6d48de857030abfab2f7 *data/stni.RData
44043b88f531241f70c8a00ffb68e616 *data/tfsData.RData
e9760fbdfcd6b74aafad046d45850424 *data/tnaData.RData
b4564ab80f02acf8c7da6761794f2ed9 *data/tniData.RData
b19ebf3106d6342891d46f97d480cfd7 *inst/CITATION
6f6740451374f2d27e8f5f2a8fea6cb7 *inst/NEWS.Rd
4204dcf2f821125061a3b199b2004ac0 *inst/doc/RTN.R
cd3656a162b2ff512a1a471f782de3d4 *inst/doc/RTN.Rmd
c1d25bd8c8cfc42a7e3f17243d5b00eb *inst/doc/RTN.html
54e2324016864ccfa717da09c412f1fc *inst/unitTests/test_rtn.R
0747bf9b842209678ec8d73e8bf81efe *man/AVS-class.Rd
21a5f49bd47d978fce977be9d56ebd4a *man/RTN-package.Rd
aa1e7e6832896198085111e7cc61e5a5 *man/RTN.data.Rd
bcb2ba662f04452e09195704dcf4126e *man/TNA-class.Rd
ba40e4d8c4820eac7f1b089131fd43b9 *man/TNI-class.Rd
e962a7a479aa70a085640987ec098a26 *man/TNI.data.Rd
344bc56c177e084e52fb605584d88db1 *man/avs.evse.Rd
588b4804ee7b4f813b289eb05652d1ed *man/avs.get.Rd
70fc4681656448d3579cdb5ab29529a5 *man/avs.pevse.Rd
7a4da51f23267a5bd021b0b453f44d33 *man/avs.plot1.Rd
727b03e5e49db8692c8daee5c331fd3a *man/avs.plot2.Rd
fa2367905288d6331708b7a353a96f29 *man/avs.rvse.Rd
3ed6a47aac542eaf0bfaa1a4afceb455 *man/avs.vse.Rd
73de5636492bdf1d7d9ec696ea815964 *man/tna.get.Rd
4f553059a90ca80cb07d4f987a2b34fd *man/tna.gsea1.Rd
840e4e0acc40421db8ccca492399613c *man/tna.gsea2.Rd
661f0c74cdf4ed2b4d755df570f56164 *man/tna.mra.Rd
3c92cbf568cc7e5bb7c4353165f86fd9 *man/tna.plot.gsea1.Rd
185023199d5408943af1f8a4427e5064 *man/tna.plot.gsea2.Rd
416794c62d7d32a886f64050bb8fb52b *man/tni.alpha.adjust.Rd
404e0584ba90dffc5fa4fdc830a28807 *man/tni.annotate.regulons.Rd
bde9532409b797b04beade0ff868ba21 *man/tni.annotate.samples.Rd
20488c4f9baefb7a737d5e11c058e77f *man/tni.area3.Rd
1432983f7fbe23f37009c48aeb876508 *man/tni.bootstrap.Rd
218ecb6fff16ac1ffd086065b0330f3f *man/tni.conditional.Rd
8ea03a68fe1ce347a2f32be01f2e9e0e *man/tni.constructor.Rd
22c72cfe6cf3cd1890188012953a3ae6 *man/tni.dpi.filter.Rd
57a0ea89c495bd72d229d1e38d7b0a6d *man/tni.get.Rd
2808ae915ca649da30f9befd0cd448f0 *man/tni.graph.Rd
9de961059464513a0531db10fc4cddd6 *man/tni.gsea2.Rd
3f2f8d0b30d1c6e016c2bc8552d98c1d *man/tni.overlap.genesets.Rd
6a2c9b4b42fd3aac51f56028ffd4ab44 *man/tni.permutation.Rd
1874f7bd43f26a332d0e3240fa7fe01d *man/tni.plot.checks.Rd
7268b88f81001019c3fbd07f760c7bed *man/tni.plot.sre.Rd
b9863454a8da136a0617c21d7d682b1f *man/tni.preprocess.Rd
98b74d3eed076990f0156f365e02b8d1 *man/tni.prune.Rd
a7577a06bc827c207b6138ebc500f379 *man/tni.regulon.summary.Rd
8250bb6a888101c3364d927f6cd1439f *man/tni.replace.samples.Rd
56fdca16a271161da973a55de5f30e54 *man/tni.sre.Rd
7898c79b7153d79e02f4a8e3b1a27d24 *man/tni2tna.preprocess.Rd
e84187f495e493f2a85a514c4e02875d *man/upgradeTNA.Rd
5c3bb761252f7d16a4b278690ec30415 *man/upgradeTNI.Rd
1e6164a632d385f0e5c33897f1ac4343 *tests/runTests.R
cd3656a162b2ff512a1a471f782de3d4 *vignettes/RTN.Rmd
736f8a822eafa67ac7fc6250c6673e26 *vignettes/bibliography.bib
0072513a16f04862b1c2fd9325cae137 *vignettes/custom.css
d4e1d4d64a9049a67268b2b86fc509d1 *vignettes/fig1.png
23b499bdb0a52a3ecfdcdaa638f2fadf *vignettes/fig2.png
af890f10b1a194f5200a8b2fac765894 *vignettes/fig3.png
f7baca098cdf192bf12e092b20284d50 *vignettes/fig4.png
c7ad54f3c8735868a2e424692fa31866 *vignettes/fig5.png
