2ed2076371c89f0b674752cef7bd6a55 *DESCRIPTION
fb93b83009ad44f680db80fe865ef8c2 *LICENSE
d7204ccc72c2c1661b1199875939add8 *NAMESPACE
c3f41cbcf8530ae79bf847cab412821c *NEWS
d4eaf91e29250e8004482fe87e12cd91 *R/AllClasses.R
eef23355c45d43b0c5aab953a3a1c22f *R/AllGenerics.R
b25ee8345b155d82d021279041689739 *R/Summary-methods.R
ce101bb8a983fb3822f30f07f09dad83 *R/graphWeights.R
6ea49e39744a24a115c2edd62a2b8eed *R/keggDataREST.R
909f7955cf86a8bf49b9d847f309be11 *R/nodeWeights-methods.R
d989dbaf276431a1d7afedeb8273b9ba *R/pDisExpress.R
831342f75c0eabc370d0f30b8c5ba8fb *R/pDisPathway-utils.R
bffb1cf932e7b4bcc11e34df669bf32d *R/pathwayExpress.R
c6631d06d7d07a71e8db56ebb31e110a *R/pePathway-utils.R
2e0fe66d17f2f00df977f08b15168773 *R/plot-methods.R
0cfd03a9eb48340329a889788e4611d8 *R/renderInfo-methods.R
8e03d543085c99f3fdeddd169526875c *R/summary.pDisRes.R
85d16a8b93b74153ec7aac2cf6305d3e *R/summary.peRes.R
a95ac60d616d763b53a1847c53997ac5 *R/utils.R
5842b23db0877215fbe0e5b49520e20a *build/vignette.rds
b97aae4cf406c43aa5191fe50a0faf8a *inst/doc/rontotools.R
01ea5343aeea4d48138b2d909b04c3d0 *inst/doc/rontotools.Rnw
0b41ff496455fe19cdd436fa95fcc3ac *inst/doc/rontotools.pdf
890955fc7f356b10cbe2e6f21905e5b8 *inst/extdata/E-GEOD-21942.topTable.RData
58276d445545aac856d91e172da68323 *inst/extdata/KEGGRESTunparsed_hsa.RData
8acac88865ba07d367a7ea79fa6bc8ea *inst/extdata/kpgDefault.RData
4e9538780ce4510d09c45954e5872be4 *inst/unitTests/test_alpha.R
7d058923f8294109a5f56f02ad8019b7 *inst/unitTests/test_graphWeights.R
1964b16e7cf18dd02094829bf5ed80c4 *inst/unitTests/test_nodeWeights.R
7536f265a1c07eab1986ac373c34bb35 *inst/unitTests/test_pe.R
350e8d8fd0b01613b252d5a72a052b12 *man/KEGGpathway2Graph.Rd
cc69370a8007c65dbb486a678c2e5932 *man/Summary-pDisRes-method.Rd
42143e364d384adee351553aa0e5eef4 *man/Summary-peRes-method.Rd
bfad37b4f26915f9a734d9564e53f9d8 *man/alpha1MR.Rd
d3d44ea0add47b7d89d5671e3aa191fa *man/alphaMLG.Rd
1d52e63584f9569557e5ae4e691095a5 *man/compute.fisher.Rd
afa63b5346971b7a29364caef0a6460f *man/compute.normalInv.Rd
60039d04052266aa3b62d590818e99f3 *man/keggPathwayGraphs.Rd
f64068fd923327a494eb6882cf0c37be *man/keggPathwayNames.Rd
eab145faeb25a31073f807717faf6bf9 *man/nodeWeights.Rd
c46cdc0864834a7de0cf6209f0bcea78 *man/pDis.Rd
d5f0acd4f621f9d87d429c8cbd6ba6c0 *man/pDisPathway-class.Rd
b2a3263f2afead6f3022a9bb72dce1de *man/pDisRes-class.Rd
94133076ca68d9a6aed5399370f63692 *man/pe.Rd
609afb320e8cb46564c840b29c24664a *man/peEdgeRenderInfo.Rd
67dd8c021c29ae4d0ff50bdd2bf8a43e *man/peNodeRenderInfo.Rd
200a714cff10cce601878d57eca1a581 *man/pePathway-class.Rd
af85ce0cbad08c3cfaae719418014a8d *man/peRes-class.Rd
f5786b769ef493d9893c5a6a015ab511 *man/plot.pePathway-methods.Rd
34dc87b64c56910c4a02c2d4b4fdeebe *man/plot.peRes-methods.Rd
ea405cd7335e5be412e68ab4de98dedf *man/setEdgeWeights.Rd
e26496b3c29c6f8eb6ad8bf814d7b46b *man/setNodeWeights.Rd
c0a955f775f1a3ff245fb56afd1a5333 *man/subGraphByNodeType.Rd
c6bb510a4ce4cc3b4032711f6dffe986 *man/summary.pDisRes.Rd
89bcdf6e47783865bdd873dbbb05c595 *man/summary.peRes.Rd
da0dac9dd77618a37d6ef7b91663d8ee *tests/runTests.R
01ea5343aeea4d48138b2d909b04c3d0 *vignettes/rontotools.Rnw
a4c082cd6a6741e05566f418d3042ecd *vignettes/rontotools.bib
