1c05bfdfbe9b3c5dabe124ae0c93bb3c *DESCRIPTION
9b61048e8d4d71611caf327eaa5dffe3 *NAMESPACE
16d2c93b42e33d4ac191d492e52dc6df *R/RJMCMCNucleosomes.R
b55b5fd9e383978c543c95f379bbcf4c *R/RcppExports.R
4601eb693e69a35cca6129a8f342974c *R/print.rjmcmcNucleosomes.R
ccf7c070e8b310f5958e58cb066687ee *R/print.rjmcmcNucleosomesBeforeAndAfterPostTreatment.R
79c9e61ac49ed5a3efa65790e3a488e3 *R/print.rjmcmcNucleosomesMerge.R
ab7aa9a31eea116bee00a30cedaa8218 *R/rjmcmcMethod.R
e94a155bfa286ad5b3a889edabf6ab27 *R/rjmcmcMethodsIntern.R
433c2a04a6fc9ab6d36c2eb5e1ba3358 *README.md
1fd87d882775f584c8cddcedc443ae64 *build/vignette.rds
fae30b9690c47d99abbeacbfbe40d1df *data/RJMCMC_result.RData
c0db264f1e3ac15b81971c2220db6ccb *data/reads_demo_01.RData
5110337caa4f2621f1f2aa38f327f07b *data/reads_demo_02.RData
3866a47f4642470b238ce675967a0ce5 *data/syntheticNucleosomeReads.RData
763b941f027dc96d2517494910ca07b5 *inst/CITATION
d41d8cd98f00b204e9800998ecf8427e *inst/NEWS
a634cc007c611488bc7b03093f08839c *inst/doc/RJMCMCNucleosomes.R
75827e8835d2170337a9c947a6844c61 *inst/doc/RJMCMCNucleosomes.Rmd
48ad66c0e59576e2383598278e4f9bf5 *inst/doc/RJMCMCNucleosomes.html
f732a0b98636e4a79a482330ca9f282b *inst/extdata/RJMCMC_seg_01.RDS
4c0a60242e3f4ba32318e3d87c63a7bc *inst/extdata/RJMCMC_seg_02.RDS
bdfbd47d1c08bf2b6c6b0d1e96312eba *inst/extdata/RJMCMC_seg_03.RDS
4a105dac3db012479c811635d3196381 *inst/extdata/demo_vignette/segmentResult_1.rds
908f901deea7afca82f8bb355243194e *inst/extdata/demo_vignette/segmentResult_10.rds
2eff1999e494b2fbaa1a8b11ff63eb71 *inst/extdata/demo_vignette/segmentResult_11.rds
847be61c130d0754a26303bdd2a85673 *inst/extdata/demo_vignette/segmentResult_2.rds
16277f7a33555df0991504239d4285de *inst/extdata/demo_vignette/segmentResult_3.rds
e908c9667a6f40c1cb2dfa5a141cd3d0 *inst/extdata/demo_vignette/segmentResult_4.rds
55d655a0756020bbcd1def6f9bf02786 *inst/extdata/demo_vignette/segmentResult_5.rds
b1e1d29db4a77d146b311f42bfaf4f63 *inst/extdata/demo_vignette/segmentResult_6.rds
3e082567de78455ff94608c6d6e85580 *inst/extdata/demo_vignette/segmentResult_7.rds
d02bf9041df2acf8ffc8f3b0fc70cea1 *inst/extdata/demo_vignette/segmentResult_8.rds
524cf200ee9551c9a72622c1c67d2e47 *inst/extdata/demo_vignette/segmentResult_9.rds
5a40998432e2d4bcd90db0a0b9035fc0 *inst/unitTests/test_print_rjmcmcNucleosomes.R
ae54641f9d31c272e514505974b3066e *inst/unitTests/test_print_rjmcmcNucleosomesBeforeAndAfterPostTreatment.R
75e12aa491f06046556204bd60ccbc61 *inst/unitTests/test_print_rjmcmcNucleosomesMerge.R
dc4e4b7db5d2dc66883ce44d4c56b670 *inst/unitTests/test_rjmcmcMethod.R
b420de3f540928793237365367e447d4 *inst/unitTests/test_rjmcmcMethodsIntern.R
0c863137d094853f61a36a57a887d9bb *man/RJMCMCNucleosomes-package.Rd
863c16a1a1d5caf128b61b371ac14c91 *man/RJMCMC_result.Rd
56ea479ff71888b6929d561d1f8370e0 *man/mergeAllRDSFiles.Rd
d29657c065e3f8cac859f841359e7a57 *man/mergeAllRDSFilesFromDirectory.Rd
9c4257bc1b832e03f087cfde8eea3453 *man/mergeRDSFiles.Rd
4e96c00344d358c4dd2c6ce3da769931 *man/plotNucleosomes.Rd
8b08d83baa8adb492268bdad7cfbc400 *man/postMerge.Rd
f5829dfa7cdb3abcfcfac43f3a4fef5b *man/postTreatment.Rd
be47c59bb3d8cfab442e2ad336d99110 *man/print.rjmcmcNucleosomes.Rd
ff0304d3b8b44ca794f222706875d238 *man/print.rjmcmcNucleosomesBeforeAndAfterPostTreatment.Rd
428f944bc31c57e283e7f1665a3db2c3 *man/print.rjmcmcNucleosomesMerge.Rd
4485b1402e1737facabd6986e0f3c625 *man/reads_demo_01.Rd
966ab832d0024a10e1b3e847a5137e5b *man/reads_demo_02.Rd
b1a8a85802de167c84d8e9699b6a916e *man/rjmcmc.Rd
92816f8c06c0efce1011415207a9747e *man/rjmcmcCHR.Rd
c95829b632b67b0332f72f06f0812e48 *man/rjmcmcNucleo.Rd
5fcdd5a0c4de46b7f6e59f6e0f649ee3 *man/runCHR.Rd
03308c4b9b68ba64be9d2f7693208bcb *man/segmentation.Rd
7ca6642efa55be5452845e3e3d8fce24 *man/syntheticNucleosomeReads.Rd
1b14244a68111438f77c88a5d790338c *man/validateDirectoryParameters.Rd
2c32cec1e33aa0fa7094a897590f2cbd *man/validatePlotNucleosomesParameters.Rd
b0b95a299f986483184a8d63d124ee81 *man/validatePrepMergeParameters.Rd
96966acc42dc669579b742a97f377845 *man/validateRDSFilesParameters.Rd
a6d7795df7a260e135b94242d5211b7d *man/validateRJMCMCParameters.Rd
f2846b0046f388199325b54d6d87407b *man/validateSegmentationParameters.Rd
e4c58865d877d2c68a783d1bb38c6818 *src/Makevars
deff16f9a34ce02eadcb42794e1c631f *src/Makevars.win
db28a78180fef04dddfc29e241db541a *src/NucleoDirichlet.cpp
24c955eda986550a406010bdc941d767 *src/NucleoDirichlet.h
5087b760fa920595a824d36cf3fa7d09 *src/NucleoDirichletPA.cpp
fb9797ad8173356cd52e6fee384e9f95 *src/NucleoDirichletPA.h
9f50e97baf227b5c6c0b58932b4c5fb9 *src/Nucleosome.cpp
bf98027bafa0c7bed7bbb4ff5173ea31 *src/Nucleosome.h
58397b89e357111d2ec8134639cd5fc6 *src/PartitionAll.h
9388e3e913888d379d3960856997e630 *src/RJMCMCNucleosomes_init.c
a7fb22db18a40169d92bb6f1af17db5f *src/RcppExports.cpp
47ce2b5eb5db918550c7987d1d3973d1 *src/SegmentSeq.cpp
c39501aec521353fa8c8e5f8d40e47bd *src/SegmentSeq.h
b493a20e99a1e749a08016346bec37ac *src/SimulationNucleo.h
d31c02a51d2ea4f63d6ce21c8191eeb6 *src/SimulationNucleoD.h
50e800cbc19ebddf2c241f9459162b9e *src/SpaceNucleosome.h
18173e8fb91690608e8e01ac3636522a *src/SpaceNucleosomeD.h
c2eab7b318458a183dedddcd7b9644c6 *src/rjmcmcNucleo.cpp
c86d65752b1fa90b33b3f6677ecaf99a *tests/runTests.R
75827e8835d2170337a9c947a6844c61 *vignettes/RJMCMCNucleosomes.Rmd
06a1298cc63f65826bf32614c8607c36 *vignettes/rjmcmc.bibtex
