7a06b7acfb6b2812d7bf1798a7ed5362 *DESCRIPTION
6e7a1e192b477f57f22afebb49edd13e *NAMESPACE
9b887b4d8e2ab136299f77dba804b186 *NEWS.md
0a296ca05018d453a6dedfcd29814f46 *R/AllClasses.R
6f2a7ddbcff45d46b72fff5ac367921e *R/AllGenerics.R
d25a3dcd519d6c264679316a41d92c97 *R/AllMethods.R
cfd5af1a4494d34533b84aaaa061e55a *R/data.R
694bcef2c20b5a2e48b39e945300ea0f *R/export_exportProteoDiscography.R
80ea1d555fe13a9411040e14c37d9219 *R/import_genomicVariants.R
80a132ce734e0b94bcc887a466ea5ab2 *R/import_manualSequences.R
e2c77dc43e703a8d08a679f0f9837627 *R/import_spliceJunctions.R
0709476a7653b95ae499bd8d0a4271a1 *R/method_checkReferenceAnchor.R
002b9aca9963778a911a5d306f76fe06 *R/method_generateJunctionModels.R
9ab4440f506f735344e2aeda9326208b *R/method_generateProteoDiscography.R
42de5a051f87407a6a987adb4595d2e1 *R/method_incorporateGenomicMutations.R
517a2b159ad4006e840b749ecbe1767e *README.md
a0ac05ed387906f9fecb55cdde35bba8 *build/vignette.rds
26949a5b0b6136753a008164f6f858d7 *data/ProteoDiscographyExample.hg19.rda
7b43b7ef342b48a4aed2d4e9132b47bd *inst/CITATION
600110760f1cdb3766e0fbcd3c3c42ef *inst/doc/Overview_ProteoDisco.R
8ff753dc67893b8eeec80e8ad33cedca *inst/doc/Overview_ProteoDisco.Rmd
35f7c61ffafc6264eea97b1fbad51bb9 *inst/doc/Overview_ProteoDisco.html
9a667f5c4720a6fe52e284094088a00a *inst/extdata/spliceJunctions_pyQUILTS_chr22.bed
dfe99326c9f1c98e39d2fc9a1172020a *inst/extdata/validationSetSJ_hg19.txt
055c3f68ab66e5203fa89ad422266542 *inst/extdata/validationSet_hg19.vcf
1a7cffbb079db01d6b0f1a3c7491f633 *inst/extdata/validationSet_hg19_expectedResults.csv
1d1f9834df8707ba4fefe43b4b0238b6 *man/ProteoDiscography.Rd
0825a61a72c6c73e2aac1609f220042c *man/ProteoDiscographyExample.hg19.Rd
2e080274b095d0ab42fab8e4347ab98f *man/checkProteotypicFragments.Rd
fc398b70a6ed98abbb27284b6aa73048 *man/dot-checkReferenceAnchor.Rd
f858e4631e04736f8a1ac13b884f2fe3 *man/exportProteoDiscography.Rd
10355edf556601cd98cf21b0c27b4e2c *man/generateJunctionModels.Rd
e726c9ce1ee17f165cd1a69813960dbb *man/generateProteoDiscography.Rd
d45657c418a3190d7fe4965a87cfe4cc *man/getDiscography.Rd
2c0c98861f8891259487c4c99d5e91aa *man/importGenomicVariants.MAF.Rd
f5501ec9ac376b39252de866be3750e7 *man/importGenomicVariants.Rd
1d60cc320ce801618eda5f029f10ebd0 *man/importGenomicVariants.VCF.Rd
3855749a1f6883e36427d387c6bd0c38 *man/importSpliceJunctions.Rd
a2adb9a31f87a3b52fed6cdaa66f5d81 *man/importTranscriptSequences.Rd
322281d610e4f79cf2ce1062c4a1e9c3 *man/incorporateGenomicVariants.Rd
4e6264341b20ecbe13e8059028b34e34 *man/mutantTranscripts.Rd
98bc216bdee787852e17608424f22ac5 *man/setGenomicSequences.Rd
82362c8a98a4e82e828ef7329a38bc27 *man/setMutantTranscripts.Rd
1f5a42e1efa1c79992a2c587ffd7f252 *man/setTxDb.Rd
c397c4669dd78516cd052580cfe8dff0 *tests/catchErrors.sh
f021f39fbe4a70b3f97c7f03a2636369 *tests/testthat.R
32f91aa279bbe96384e511cd8b9b54c4 *tests/testthat/test-ImportingManualTranscriptSequences.R
7bc9e7bdbdcdac203dd06265ba213f14 *tests/testthat/test-determineProteotypicFragments.R
d222324e7b22644ecc29e824d38b5f4f *tests/testthat/test-importSJ.R
835e5eb5b66f04c28f6aa4da5a95084a *tests/testthat/test-minimalWorkflow.R
8ff753dc67893b8eeec80e8ad33cedca *vignettes/Overview_ProteoDisco.Rmd
