7c82585d2ea1f3121b6282b5737ba1d1 *DESCRIPTION
8ff214822842418738071dc85a476074 *NAMESPACE
be1ae592ef4f2503f24b70ee60b50236 *NEWS.md
87f1b9515d5629cc11a6463b87d4ba2c *R/ConnectedComponent-class.R
fb0f3ceed095183d693d6d8b8f5b8e68 *R/PSM-class.R
1afee4886dd5435f408f4734e31a29d7 *R/PSM-filter.R
0ef98a5af7f71ec10d9c0cf7f622342a *R/PSM-read.R
6808ef4318193f6cb603a4c0d17bea54 *R/PSM-reduce.R
7c631bcd9cfc4a9744e05cb18a379be1 *R/PSMatch-package.R
54bb3a2b074d491d426210a97ac3324d *R/adjacencyMatrix-accessors.R
fa85b649245639a47ccf1e9109a96893 *R/adjacencyMatrix-create.R
7901f4b661657e33d2fcbf1ba66423a2 *R/adjacencyMatrix-plot.R
896bf248de2edf18fbfcfd748dd10df5 *R/describe.R
3b7ddf0f8d0f4832ab2ffb0254b8aaa1 *R/fragments-calculate.R
3ee04159e13b369623daa787cfb4e35e *R/fragments-label.R
41e27e07865e11bb2153ed7ac9fc0329 *R/fragments-utils.R
b96ba23ecd066e7b26161076c454870d *R/functions-mzR.R
759b19c139df2d81cf391a6f18e512e2 *R/plotSpectra-PTM.R
90ac62c96ed7a68619a00b44ae6df89c *README.md
66acd4e9ceee6f69a011d038c44febfb *build/vignette.rds
9fec2dd8bc3325ca566acc0c34e8eca9 *inst/CITATION
420aaf1b5d9fdc1f535527b4aa5a10a5 *inst/doc/AdjacencyMatrix.R
34240f083183f4b9b2f531b250471e18 *inst/doc/AdjacencyMatrix.Rmd
9297cd31daf0f751c5f5af18481c1a36 *inst/doc/AdjacencyMatrix.html
9d03bc9ec4eaeed6980ce55204eabd0f *inst/doc/Fragments.R
26ae0d757b12a55c80edd094a2b0a5ad *inst/doc/Fragments.Rmd
ce0fca1811279c80be216b6889c4c1dc *inst/doc/Fragments.html
d5cab93cb808bca5b9ef6eacd8fd98e7 *inst/doc/PSM.R
72fca193dba0f1c507b5a1a0b8da2f96 *inst/doc/PSM.Rmd
0e1734f3766a2521adddbe86d82d0e8f *inst/doc/PSM.html
986e149a19aa25c2e8cd71f522983ccd *man/ConnectedComponents.Rd
f2d5519ad0256e5435ddfdd56d4148cc *man/PSM.Rd
0accd55e2f55743a7b160c1724a36108 *man/PSMatch.Rd
a92ba0b30d58255393bf69078729b30f *man/adjacencyMatrix.Rd
566494e5080e8ede207666354455b2fd *man/calculateFragments.Rd
6d1a9cc608b0a8cba062a602dce01a58 *man/describeProteins.Rd
f547667a72071e88d9ca6205d6b590c8 *man/filterPSMs.Rd
6499d980e72e3632a988cfd39523d2e8 *man/getAminoAcids.Rd
4b884c1b52837bb49c5bb516dbadaa06 *man/getAtomicMass.Rd
444276d4902fc7d504da9543cb0182aa *man/labelFragments.Rd
545e0cf96006ace43443ce892bcaa4e7 *man/plotSpectraPTM.Rd
f56ae13782256ac316f67dc95c542980 *tests/testthat.R
19decd26d46eedc0da10898e2e2704df *tests/testthat/_snaps/plotSpectraPTM/deltamz-false.svg
3f6fc5f1d18bedeece291976de48b376 *tests/testthat/_snaps/plotSpectraPTM/deltamz-true.svg
a09abd9ab758abad2ffb9d0bbcda5574 *tests/testthat/_snaps/plotSpectraPTM/diff-col.svg
52f0b523106cfc2379c160544f8fe35c *tests/testthat/_snaps/plotSpectraPTM/usi-true.svg
0d635464668023729a1996e034d02cb1 *tests/testthat/test_ConnectedComponents.R
0abb6589e9d062da5137125b1a9319b6 *tests/testthat/test_PSM.R
c7ee18853084b2a4ceda7570435f903b *tests/testthat/test_adjacencyMatrix.R
223d43914db0862299da595115b68583 *tests/testthat/test_describe.R
176fcca397f04c51b11335e1617732ea *tests/testthat/test_fragments.R
f915f82e22f5cddf165e441ab28a050e *tests/testthat/test_labelFragments.R
f17cfa2de0ca47f08f5a511c8cc0f457 *tests/testthat/test_plotSpectraPTM.R
34240f083183f4b9b2f531b250471e18 *vignettes/AdjacencyMatrix.Rmd
26ae0d757b12a55c80edd094a2b0a5ad *vignettes/Fragments.Rmd
72fca193dba0f1c507b5a1a0b8da2f96 *vignettes/PSM.Rmd
