cbb054d0005eeffa5677d4b3c2ff2b51 *DESCRIPTION
1ebbd3e34237af26da5dc08a4e440464 *LICENSE
a95a16c828dfc7e75ae70088cae86cd3 *NAMESPACE
2474fb5e95911dff26586b357a3fba39 *R/PIUMA_Clustering.R
397fd63e461666e78d87526179b97716 *R/PIUMA_Distances.R
4fc0d219bac62c9c530b291aa368fbe2 *R/PIUMA_Enrichment.R
9f53910c6b10d54ea75131ba47a261db *R/PIUMA_Generics.R
7536608a4e79ab6e6a22ff734d8e2446 *R/PIUMA_Import.R
812b925f12ee9c289b59cec655e0e133 *R/PIUMA_ImportSE.R
08a0071c3acc4099ef6e695a027ab936 *R/PIUMA_Jaccard.R
b7eb58e167208464103f4f4d912f089b *R/PIUMA_MapperCore.R
fc18356b505e139c97f083f1d5db5121 *R/PIUMA_Methods.R
5c7dc5ad9dbcfa8d37436e3da4248799 *R/PIUMA_Projection.R
57f890a754d79904c08f2a62226fdd98 *R/PIUMA_TDAobj.R
ad6bf3dbcf09deeb88a746c06bbd9a5a *R/PIUMA_assessTDA.R
3778012fd7880adb4e851ab18aef4657 *R/PIUMA_packagepage.R
850a441d77749eb660f8d8fc4fa36502 *R/PIUMA_testdata.R
658323c717d5a9c7dfb5486571dcc13e *R/PIUMA_utils.R
9c66f801a95fb25b88a24a8bff2ec5a9 *R/zzz_globals.R
b48633186f73034b5c37fc4b0d72f55f *R/zzz_namespace.R
fc3d21e5e6a4b4269dc8baa36cbb86a9 *README.md
f8b226f09b50af2e67140c4d3540eda5 *build/vignette.rds
87fd3428ceef00b101d075e2094eb042 *data/df_test_proj.rda
86e01905225d455d15e36f99c28db482 *data/tda_test_data.rda
ea45c02ac6718e20d561091c8ffc95fe *data/vascEC_meta.rda
29511947218180abb36d5c5c8529b033 *data/vascEC_norm.rda
fb4c581af0aa72d1d8cec2a089a13765 *inst/NEWS
74a2666075dcce081dd0d707cf742aec *inst/doc/PIUMA_vignette.R
eca3c4ac0f4a085f9d64754c0130a163 *inst/doc/PIUMA_vignette.Rmd
2e4fa7f38949485d3f8a64f67b51a663 *inst/doc/PIUMA_vignette.html
8e3dce774f4dc81938054e6d1102b64f *inst/doc/VignetteSeurat.R
287d57b16815f610857d34ed6717c1cc *inst/doc/VignetteSeurat.Rmd
3fc2cf310ed4aba583682fc37662f47a *inst/doc/VignetteSeurat.html
9951e165ee01e73eb1dd5d3301bc734f *man/PIUMA-package.Rd
187928b40ee45fa3acbfc29268a0fd9c *man/PIUMA.Rd
cb3fc15c678a84df0715972bea38fa85 *man/TDAobj-class.Rd
bf4c182ab73f1df16aa5c9e06952fb76 *man/autoClusterMapper.Rd
6e44911ad7243942a15231b5043af6a1 *man/checkNetEntropy.Rd
c46d5e0d390613975f9a8486821889e8 *man/checkScaleFreeModel.Rd
9b9f0ceb86bbd8fc628b0349a13b9786 *man/dfToDistance.Rd
cbe105c4d50ecc16d2eeb606f4108478 *man/dfToProjection.Rd
a0c9d883abb5dcea77d2b38041172a48 *man/df_test_proj.Rd
8695d2cbe90e5373c50da5db04c0b41f *man/figures/logo.png
82ac85cc0e5f3a478c4c78ef262dc9b4 *man/getClusters.Rd
745d9dacfb186c4157731fc79c6bde7f *man/getComp.Rd
4f91a63b2f459e3077f05872a4c960fe *man/getDfMapper.Rd
eecf4c1bdd0b30e3cea5d3abd5b670a0 *man/getDistMat.Rd
70a0dbbdcec3e24636c5e02d2c9c1778 *man/getGraph.Rd
cf784cbe31a58abaf83e448daac54006 *man/getJacc.Rd
187fc2a38ef3d99e4ab7a15d565ccbae *man/getMetrics.Rd
31a4e855100ad5f2edc13056582d972f *man/getNodeDataMat.Rd
4c3b741f275230719e0db9cb09c57c8f *man/getOrigData.Rd
f6511248a400c0f48e347e036b503445 *man/getOutcome.Rd
e169730f459c60388be034f4af0fb13e *man/getOutcomeFact.Rd
9d51865964ac07c8a87bed081da15881 *man/getScaledData.Rd
0ae3251815f89dca6900434df9901e3e *man/jaccardMatrix.Rd
479419a735719d058788e887fc5dfb26 *man/makeTDAobj.Rd
bfc1221ac514a6069e57f8f7c9cbfdcb *man/makeTDAobjFromSE.Rd
f88aae715f00377bb6989b41d99cd58d *man/mapperCore.Rd
a7ae841e837bcad527cc9991defe8ceb *man/predict_mapper_class.Rd
b455e0033b3a169557d08987ccf8133a *man/setComp.Rd
5a523581191c9441d0f2c745691f41cb *man/setDfMapper.Rd
9cd7e44d49a515c15034217f9c9ab6cf *man/setDistMat.Rd
744360d2aed6cef64eb21489b367c7ec *man/setGraph.Rd
a79943ad908a0ca371d31edbdf766694 *man/setJacc.Rd
f4d2f791dd5b69b91c1fbeea06485b57 *man/setNodeDataMat.Rd
8fcc4661036cc28628e1cfde958d99a9 *man/setOrigData.Rd
c2db0c9064376ac57e19d4055c8451c6 *man/setOutcome.Rd
7c8a68deecfd2d98e3adbc42ca727ed3 *man/setOutcomeFact.Rd
6d3c40e9dd7c4dbc0c1181ccf730b8d6 *man/setScaledData.Rd
d159ece17db0a066c4d7347b72e62262 *man/tdaDfEnrichment.Rd
0cff0db5f5cb2808ef8fe8651c5ab7f8 *man/tda_test_data.Rd
033b5a4d52dce2414e5f1533099c8f57 *man/vascEC_meta.Rd
d1f2746fa86829b773bf07e334707e0e *man/vascEC_norm.Rd
d8f78f3aef02128436aa4651185be2a4 *tests/testthat.R
fdc3c34b5edbac3cc462e18f185e7508 *tests/testthat/test_PIUMA_Distances.R
776b5692716f69bb7cb15977a5897395 *tests/testthat/test_PIUMA_Enrichment.R
f7a9ad1b9305f020af2fea452c6abbf8 *tests/testthat/test_PIUMA_ImportSE.R
dfdaaef1c042a952c50461881f979765 *tests/testthat/test_PIUMA_Jaccard.R
55589bf549a4226296f001b6fdc379e2 *tests/testthat/test_PIUMA_MapperCore.R
da3f63f1715fea8d5ad094ca3d8efdc3 *tests/testthat/test_PIUMA_Projection.R
87e37015c58cb22a50ba6420204c105b *tests/testthat/test_PIUMA_Utils.R
7dc66df7e2663248af024443fa1a3beb *tests/testthat/test_PIUMA_assessTDA.R
600e41afa16b251d93c96abc21c80440 *tests/testthat/test_PIUMA_autoClusterMapper.R
a1560b5afb7d3f4d7497f4367ca827d3 *tests/testthat/test_PIUMA_import.R
04ff05e501e5f513b1f875638677d14d *vignettes/CytoscapeOutput.svg
418af06465d86a882f8f4c2ba4275e47 *vignettes/Logo.svg
eca3c4ac0f4a085f9d64754c0130a163 *vignettes/PIUMA_vignette.Rmd
104f4261276b0f5db6c9e6c9bc897f25 *vignettes/TDAobj.svg
287d57b16815f610857d34ed6717c1cc *vignettes/VignetteSeurat.Rmd
21f76ef7b949d7b46686d97803f65d30 *vignettes/library.bib
