14e5006c50a87ba5ed19ff8a81a74864 *DESCRIPTION
c981c2c2a37f03e04c65bc78cc269f24 *NAMESPACE
7e93c685450dd60c9976ac16d62405ee *R/OGSAfunctionwFisher.R
af769b33288640e0ec56beffb8569e25 *R/OutSpliceOverview.R
168eb9a4a4a0ba26caf7a124a61b31db *R/PlotJunctionFunction.R
fddeac20cbf0eb1af5004a1537822127 *R/SpliceBurdenfunction.R
5fbb36955bb0b1f5a95d8b410dde2c18 *R/SplicingOutliers_Function.R
ac7e46e7a15fce2d351c6e262fd18409 *R/TCGA_SplicingOutliers_Function.R
b7b6de2aed60711cada642e88260f525 *R/checkArgs.R
c4e11ceb2f47e0f650dddad8efaca02e *R/getExpressions.R
970955feb953a2eb08356afbb555c559 *R/getGenomicInfo.R
2809dcf32d2898d2ae16a9212494cba4 *R/getRPM.R
6eeefc8c81b05bcdf873e37541b6dfd5 *R/normalizeJunctions.R
8f68a194ab2a99602b613b28d1a64592 *R/outCallRank.R
1558059d18f8132baef91a0679650879 *R/processMatrices.R
df80f8f0e44fd1177063c3cfe43fa4d5 *R/saveResults.R
9a3513b63073d173a2b5e88ab593751a *R/subset_overEx.R
0a4f2ef86acd6c66264cf48ed2ab61bf *R/subset_underEx.R
8a936d82784e86272eaa7b1463e4bea7 *README.md
af452b254ce8288337c99a45dab9d0b8 *build/vignette.rds
d7ebe6f0b3e6272426068e3290ebda44 *inst/NEWS.Rd
97b0f380c6fc7a2ea0c360885ee78b10 *inst/doc/OutSplice.R
dbcf72d2bef90cc8d4dd94526d76509e *inst/doc/OutSplice.Rmd
4b81bc69537bf4cb28f08de0585b9fe0 *inst/doc/OutSplice.html
dbac3742c88998653543921b725266f6 *inst/extdata/HNSC_genes_normalized.txt.gz
48dab852022c572cc8ac0dee865f69b4 *inst/extdata/HNSC_junctions.txt.gz
a3b2d06adf88167438116785f8ac2c1c *inst/extdata/HNSC_pheno_table.txt
4650669d552701e699318badffe59130 *inst/extdata/OutSplice_Example_2023-01-06.RDa
303e6ffbf17c79a58a2eaf9c1898c389 *inst/extdata/TCGA_HNSC_genes_normalized.txt.gz
955ff94e036a94e7317e3d44d7d467bc *inst/extdata/TCGA_HNSC_junctions.txt.gz
4c44729a19f764333aaef77d2a0bf7c0 *inst/extdata/Total_Rawcounts.txt
79073b2c828c81111f6aa6c3fce8a395 *inst/script/create_testset.R
aa4480491479c91eac66b90349a8852f *man/OutSplice.Rd
a844372fad6870c6f2e206b120961e73 *man/outspliceAnalysis.Rd
d16223d70b89aa33a23e314c2b6f08a7 *man/outspliceTCGA.Rd
6859e9e89b6d798bb2a3b51e67dd0a92 *man/plotJunctionData.Rd
4c8a88fc6518198888e68bafabdacde7 *tests/testthat.R
7d29382bd644c9213bb7d2022d048929 *tests/testthat/test-outspliceAnalysis.R
96f031e1f3311c04b71472ae30c9cc88 *tests/testthat/test-outspliceTCGA.R
8dfe8dcca0a0b1d05c52521412a3cacd *tests/testthat/test-plotJunctionData.R
dbcf72d2bef90cc8d4dd94526d76509e *vignettes/OutSplice.Rmd
