fcb2cf2fbc50109c073406923d28eaf3 *DESCRIPTION
8491e50766ce06fad87b9274716239e1 *Dockerfile
8a7ee590c7678c2b7d86afada86e711b *NAMESPACE
adb90dac1f67f1ded99e014448c91694 *NEWS
4655cf14ba93edd91af4a666143463be *R/NPM-package.R
d89c5547173e2792eaaa7381aeb3a624 *R/dbExtract.R
115742b2951375a8074ebaa2e34a5a72 *R/netProcess.R
4424919003bde921800763dbbb412714 *R/netWeight.R
4dc21d2bbb152373c87ea1f8e617efe8 *R/pathClassifier.R
21668de8d85e2ad2cf3d27d06b855ba5 *R/pathCluster.R
c519de3284e02d3f31c84749a6b317f2 *R/pathRank.R
da9ccb451e60013595058815a3f68f31 *R/plotPath.R
99a19ed1d9c8ec6b6b677eb8e187111b *README.md
78ef80e0cf8626069407b1619870b182 *build/vignette.rds
080cb6627cd654cf1091715c0ec30df5 *cleanup
013f922f11c6444fa5b0c68fb4481545 *cleanup.win
7d48a5d580f4b977d77178ac043ccc60 *configure
6ebf98ba18bb21527401afb691d83db8 *configure.ac
5c2d24569c0fd92c2fb03c51f9429d4a *configure.win
1bc0ce6cba2a727271c78e1de806d734 *data/ex_biopax.rda
4047271d570140e191ab0eaf87e689be *data/ex_kgml_sig.rda
1ba1829ad2a98aa951348bdb055b0842 *data/ex_microarray.rda
6169d302ee2e2e8e8ea5b650df6baf39 *data/ex_sbml.rda
af77787384bc148846fd1c6b6798099c *inst/CITATION
c11e6299d9d343ccdc919e981d0a9594 *inst/doc/NPMVignette.R
30152cca7608ff054cb71d53b12121d7 *inst/doc/NPMVignette.Rmd
91f341feebe09bcb656cda9dbdb89e46 *inst/doc/NPMVignette.html
71ba80b5dea114af473ae9c2353efce7 *inst/extdata/env_data.RData
f2d7a729aff9267a13833445c01e35da *inst/extdata/hsa00860.xml
11d33cdf401c54e160a6c9e51d9b7726 *inst/extdata/porphyrin.sbml
b2d0152e6b7446e87a511c28b1542e97 *man/KGML2igraph.Rd
6480925531783b3a5819a1eefb41f525 *man/MIRIAM.Rd
7ca04a6dd6809adbf29c990b35e4f85d *man/NPMdefaults.Rd
b3974d0b89953208907a58b4df2ca882 *man/NetPathMiner-package.Rd
bcfa7332f1c327f3fd3ed24d30e044b5 *man/SBML2igraph.Rd
a105c8ef37ce70e9f93d9da57bab8b86 *man/assignEdgeWeights.Rd
28ca348d186cb130d26614bb6040715d *man/biopax2igraph.Rd
703ab7269486807bca2b49315297136e *man/colorVertexByAttr.Rd
ec3a2a8e89a04342177c24d3f5019868 *man/ex_biopax.Rd
6977ba5120b3b29aaa4be0c509ef1f35 *man/ex_kgml_sig.Rd
7d3c465d66bc8bacf1133821879cbed2 *man/ex_microarray.Rd
2a4602cb65965c2dce1a6db00079fce9 *man/ex_sbml.Rd
9f31e591c4c372218fe2a20c1f3d8028 *man/extractPathNetwork.Rd
6ad89da36138ea9c7c620baa2f32a177 *man/getAttr.Rd
717c88ae3bbfe484af15bf6d5086e3c7 *man/getGeneSetNetworks.Rd
7a495c6a3222adf51230ff146c0b5cdc *man/getGeneSets.Rd
5097f92272aa09bee42c31ef03693d9d *man/getPathsAsEIDs.Rd
9db8cc10bca150e1cb2b8accc9e3d18b *man/layoutVertexByAttr.Rd
a1801c66698318eefc998ef4d8fccf3b *man/makeGeneNetwork.Rd
34a4ca0b6500c4c33fdb24387c890295 *man/makeMetaboliteNetwork.Rd
e9bf7fde2e1a78a1435c242172f51201 *man/makeReactionNetwork.Rd
484e27cf6ca6cb661c8b5d1f6edf2ca0 *man/pathClassifier.Rd
eb05aa072821865703d69e55fe0bcd06 *man/pathCluster.Rd
30aa111d94c0696828de9d15f13d5d7d *man/pathRanker.Rd
39e99d4c283beb7d41f44662e111dbe3 *man/pathsToBinary.Rd
e93ccc5e9c05c478594cfd6c6dd28069 *man/plotAllNetworks.Rd
68270a9fd4ad73f5125e89008a9526bf *man/plotClassifierROC.Rd
993aa0e1cfb5fbe65516efd1eb5f71d5 *man/plotClusters.Rd
5d5e2e00971dbb2e0e980df44d330f86 *man/plotCytoscape.Rd
cd575f6ea2c57535e9300e876c7347d5 *man/plotNetwork.Rd
01d8d96180ee156d57bb16f03795fee5 *man/plotPathClassifier.Rd
8a6a46462ce5ae11e77452ab84c5e593 *man/plotPathCluster.Rd
c42072c97a55e7955c03cba0f9e916da *man/plotPaths.Rd
88ddf06e72af1afd320d41a7936ff990 *man/predictPathClassifier.Rd
bcc6875e3ac0e9524836523fb8f9485e *man/predictPathCluster.Rd
4610948c3fc6b6445e1d30145d4ca33c *man/registerMemoryErr.Rd
9b28efc8db3347928f2bbef1ab6eb0a4 *man/reindexNetwork.Rd
775b91d7167777a086a40ba763015687 *man/rmSmallCompounds.Rd
bb38121fd4658a0e6dfb491260e8d034 *man/simplifyReactionNetwork.Rd
ad0b18ae93263c480b677b5712869b08 *man/toGraphNEL.Rd
61ebaa638c0947e772706cb43bd34891 *man/vertexDeleteReconnect.Rd
07d760aceb6a506971103707c34f2779 *src/Makevars.in
6409b6218146f91c4497d926f41e880c *src/handlesegfault.c
c1c3e890f2b2e5c2fcb94a720719fa2a *src/handlesegfault.h
10a32e7fd4283f506907c16660e2053b *src/hme3m.c
81a5709ea6aade7af90ead11a881f41c *src/hme3m.h
27bbfef28fb764054e3ba99a48a3f962 *src/init.c
8740b489a869d5ca2359893721ddbce8 *src/init.h
13c40f6c7c406b72c8d14aa763d35046 *src/kgml_interface.cpp
283638527e9a4f92b2fa20c297606186 *src/methods.cpp
9100c864cb0d8cef0f259ea0bcf345e7 *src/sbml_interface.cpp
1c18747837af484e998c42badc3c4850 *src/sbml_interface.h
30152cca7608ff054cb71d53b12121d7 *vignettes/NPMVignette.Rmd
4940fe7c8d84d89ac3b2deace351c957 *vignettes/ROCplot.png
55f8f95dad7bbb5aa2e78f0e5ba1dff2 *vignettes/example.R
