3bc82f964d887ada7486bbe86cdb85e5 *DESCRIPTION
14521c54a58c4fc0f55568d1ffa806e7 *NAMESPACE
6e750298e854a1cdbabd50fb79c7b23c *NEWS.md
8ec8f0039139a3db9a5b2712e408de2c *R/NADfinder.R
d6b3a11ae29e499e3f49584d97a1d789 *R/backgroundCorrection.R
dda837696e1d7382fbf263dd10b39589 *R/butterFilter.R
53773f716a14e3269c2c81f45ef4502a *R/callPeaks.R
1f696305cd9cac3062c030de68e1b14d *R/cumulativePercentage.R
4f6d42c60ae10f0619f3c5d9f85337b5 *R/exportSignals.R
1064af53bb17c1d5fc8aecfa788b99bc *R/getCorrelations.R
1e2164ca0b5ee2e77d3a2f8ed9d75a03 *R/groupZscores.R
ebeddf01c7bccf324e324db79898eccf *R/log2se.R
3696aa8cbc4f553ae9ca77cc1bad731f *R/peakdet.R
fa6dc26da6783ef6ffa9c776554da496 *R/plotSig.R
fcebfa9433335f5183a0af31b7f7f4f5 *R/single.count.R
561a0f70418d8b63a16e235991a4e00b *R/smoothRatiosByChromosome.R
1ff67b8d142c694241c20717f8fb7f61 *R/tileCount.R
8b458e24375ef7c572fdb7c814d631d6 *R/tileCount2.R
ddcaeaa7fcaae617b444abe15201cb74 *R/transformData.R
b01e95c7ada3e409ecb04e54eb983eda *R/trimPeaks.R
2500bf78b37f3967378ddb76f3146c4b *R/triplicates.counts.R
bd9b3616f907dadd1f58395c86919e5f *R/zscoreOverBck.R
0140c1bed7007dc132b11244afa45fa2 *README.md
d27f442af8fdfe1244778a6bae09020c *build/vignette.rds
8b787a4dd482b49af8262b168bf7d633 *data/datalist
237d5e561c1a959c7dd7a25f305541c6 *data/single.count.rda
b222a00db322d93d49d19fe98115e257 *data/triplicate.count.rda
195251c769862f4d1827666e6a22a0f3 *inst/CITATION
fdf0b37253ea3af0e5aedd2ff2ce4d02 *inst/doc/NADfinder.R
f37f88029e1044b2c8328b68d2edcbd9 *inst/doc/NADfinder.Rmd
32487e8be629441c851b4522e1e0d4f7 *inst/doc/NADfinder.html
570c895faebc03229bc812803b3a6da7 *inst/extdata/G18.subsampled.srt.bam
868166d78d2800d60ef2f7d7d21c00ba *inst/extdata/G18.subsampled.srt.bam.bai
a07e30360a376c90db0bef36a6b53bb4 *inst/extdata/N18.subsampled.srt.bam
3ff1935540e4bd842609af02db953211 *inst/extdata/N18.subsampled.srt.bam.bai
c97b6d9f35a67e7573f1a8b61ea353af *inst/extdata/ideo.mm10.rds
81ed3fb637f1c7b2542025dedef0d145 *man/IntersectionNotStrict.Rd
70a9cc1b9e857878da1ae49968773cbb *man/NADfinder-package.Rd
249148978dd601583c9023ca5be1be2a *man/backgroundCorrection.Rd
839beffb7abe79875ee793f7b6878e15 *man/butterFilter.Rd
91da15a2c0af1c2383acd87efaa15bef *man/callPeaks.Rd
bbf95a54bff15eddede096a90d2ad6ed *man/computeLibSizeChrom.Rd
ddcd7a2ef70f97b7a9914b2059704787 *man/cumulativePercentage.Rd
481a8b6f5452b8ab543be767ce6b8584 *man/exportSignals.Rd
281f6286dc5c149afa4c801e770c84b4 *man/getCorrelations.Rd
786882a8c1e0aee2738b5bf619a391f9 *man/groupZscores.Rd
778cdaeb8a2134981ed26297fc0a3567 *man/log2se.Rd
5b2eb738279e825722cdaeb549b32897 *man/peakdet.Rd
9cc651cfc0edbffdabb6062dfa8bd656 *man/plotSig.Rd
0e949e24ee56f937cb5887a6e0eca8d0 *man/single.count.Rd
a44c2a406c2508e73ea1652e6cde1f0a *man/smoothRatiosByChromosome.Rd
04b576bf32d2b0f8d2bdcebd42008880 *man/tileCount.Rd
8e02b86aca7e400e8edaebc08e63925a *man/tileCount2.Rd
1818e8f44d50eea9f2863261cc60b6e1 *man/transformData.Rd
9a79e4fb1fb19bd8bc115f0422a636bc *man/trimPeaks.Rd
0431c361b7a7cf53e370504463eaed9c *man/triplicate.count.Rd
d341f3ce5f91b75b4fb719b4a72f33d5 *man/zscoreOverBck.Rd
57f38f3b505808273ac1d752c64aa807 *tests/runTests.R
63b543cfe81422f489b638b74ebcbc3a *tests/testthat/test_log2ratio.R
4040f1c6a9f377b265f6804c8474d268 *tests/testthat/test_smoothRatiosByChromosome.R
2f896046da4f17e1b52194403c9a0393 *tests/testthat/test_tileCount.R
bdfb8aacadd94d32efeb9924de050076 *tests/testthat/test_zscoreOverBck.R
f37f88029e1044b2c8328b68d2edcbd9 *vignettes/NADfinder.Rmd
f11d5b89a9f76d13d92fca8e3ff357a8 *vignettes/Picture1.png
bcc241f0ddc8223f62970169e43592ad *vignettes/bibliography.bib
2fcaf97a783a254afac21cc1d2e44b8c *vignettes/nature.csl
