143b0591282ca149161155307de5e1dc *DESCRIPTION
25d58913be6e64f8e19e72ce1d784032 *INSTALL
5c1458d0a9398053eec06a8ff3dfad43 *NAMESPACE
55bc55581759ef81dd7b619b373b90c0 *NEWS.md
c16aa1bfbf41e5bcb3641c8b87eeca16 *R/MotifPeeker.R
9804b3de8925d6986b81cad8325f860c *R/bpapply.R
c4e29e5145206dde1f46a582be0ccf0c *R/calc_frip.R
7db0780a00f324e788f174fb3495f58c *R/check_ENCODE.R
83e8ecd2302157e3e2fc324b28711ee9 *R/check_JASPAR.R
56eb1e77c8ad50cc70184f5ef35f965b *R/check_genome_build.R
4b72a16c7a3d589b349107016ce8763d *R/check_input.R
88ccb12edee5e936dc3659029a637df6 *R/data.R
00ccff9a0b9e4d5aad473e780302cb95 *R/denovo_motifs.R
4c6c79943b6ac9ba7e216fe542a31c85 *R/download_button.R
a21af4a02142bcb774cc92986db5a8f8 *R/dt_enrichment_individual.R
1799430f783fda9e874a925aa795c684 *R/filter_repeats.R
bbe99407edea220ecbc202930a4ee06e *R/find_motifs.R
5edb195af5b884c77813e55d3b2134ac *R/get_JASPARCORE.R
8e8eb1c5baffb8b501e97c2bee64cd8c *R/get_df_distances.R
d6a551ec0e1872f39fb6781acc3b9678 *R/get_df_enrichment.R
4b302b75155d4e8b5c48af1d27e74472 *R/get_download_buttons.R
9da416af3ff6986937344ab815ec9655 *R/link_JASPAR.R
5e8e5c24332d65163e0e993b078e869c *R/markov_background_model.R
f6ec2e52fb8c69f3c8704d8e5967f9b8 *R/motif_enrichment.R
51e352e3f757cd316584d9d804a9763c *R/motif_similarity.R
a8b048d8485a77dfc7fb830ca81b1b54 *R/plot_enrichment_individual.R
a84f52dc7fe605ac906068507e2f4bc2 *R/plot_enrichment_overall.R
62aa84e44d965367817424b84c2e301a *R/plot_motif_comparison.R
e8dae7383cab774379c667dce234972a *R/print_DT.R
48d828eec0e0094940fb77c9f5f2a2c7 *R/print_denovo_sections.R
d6f4bfef34c847486ecaa849c338c728 *R/print_labels.R
c02098092b9c5a8dfde90726cc7d3639 *R/read_motif_file.R
f7f0790b8fa5433edec422ffb17f2fc4 *R/read_peak_file.R
d6cbdcb4998b323ebd12915f2196668c *R/read_peak_file_macs.R
d1cc1a0964fd77b61e8cc779dee96282 *R/read_peak_file_seacr.R
5ec0863c83888fafe6312f8bb345248e *R/report_command.R
66c08b71ecd7d717abd492ce0d9d5d01 *R/report_header.R
80e8b35e4afbf53735695556e1d02b86 *R/save_peak_file.R
f687731b61b2541d7bc3c67c43731bcb *R/segregate_seqs.R
fbbeae0ad30c6e5e668ab01557fc96e1 *R/summit_to_motif.R
9e707369c54a752541cd67196acf0906 *R/to_plotly.R
de0cdcf8731d244679163f54c0c13319 *R/trim_seqs.R
008ae06914ab048c1a497813821fda92 *R/utilities.R
f986022f5dc8a559c84346f0c12dae64 *README.md
34099390e4abea13e8289341f80b93fe *build/vignette.rds
b801394e74b6a9d12a2a57c87dbded92 *data/CTCF_ChIP_peaks.rda
4cdb4d5a6a5644e75fc6d312d21917a0 *data/CTCF_TIP_peaks.rda
4ef1a9e99b239dd0ec876b1ac26a4fe7 *data/motif_MA1102.3.rda
f405e8d4d9c095d556ec9146020c5d7f *data/motif_MA1930.2.rda
231bfed53e858ca97bcef6be9cfe03d6 *inst/CITATION
fac0808a3aa4c481e8ecf950dc2d58ce *inst/doc/MotifPeeker.R
e17111444b8bf4343b73aabe4e29867d *inst/doc/MotifPeeker.Rmd
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1494527062f3f0deda2c3e4821ecdd4c *inst/doc/troubleshooting.R
07cc4b72463ebd1f2c4ba92633b43a1d *inst/doc/troubleshooting.Rmd
337cf0a0fc5363e8dc5968f7311f8d11 *inst/doc/troubleshooting.html
307967c761d7bef82ced01a5ed2a6cd4 *inst/extdata/CTCF_ChIP_alignment.bam
c98e3daaca54d6aa42c3b7f6f649d684 *inst/extdata/CTCF_ChIP_peaks.narrowPeak
cc371e5104e2e1513ecef18713cf59ba *inst/extdata/CTCF_TIP_alignment.bam
7edc40f0682101bb2b6e2248de768e79 *inst/extdata/CTCF_TIP_peaks.narrowPeak
20d69ca193c1914c1bd6ca5a56463e65 *inst/extdata/SRR16963165_SEACR.stringent.bed
4b8c28b56656997c35788bad27b2e44b *inst/extdata/motif_MA1102.3.jaspar
df24cc6236785e053ce8e004e7600ca2 *inst/extdata/motif_MA1930.2.jaspar
e92c8732d7d64f4bab6c0606f79422a4 *inst/hex/hex.png
272e022a9b7a6c1160a1df38f1ba0c99 *inst/markdown/MotifPeeker.Rmd
d3cd376421edf0e44b0abe4b634414e7 *inst/markdown/custom.css
593b37506fc9c50ca26f9af84dd123df *inst/script/CTCF_ChIP_alignment.R
854319534e98b10b2d34d45fae3dd2bb *inst/script/CTCF_ChIP_peaks.R
83ee5e7af8e103563486a6547174aad5 *inst/script/CTCF_TIP_alignment.R
563e7a78b6ef9d8a949d455e9110d5b1 *inst/script/CTCF_TIP_peaks.R
51be7d8f3b8822fe07906a73f570b7ed *inst/script/SRR16963165_SEACR.R
acdf5388be85e3d77ffef9a9def2bf25 *inst/script/motif_MA1102.3.R
b7faad1f66d53d1fb97865c5513d837f *inst/script/motif_MA1930.2.R
f813d12ed2adea8787328560a0e5644b *man/CTCF_ChIP_peaks.Rd
cbde6bf2b4a392dd1a62f24e8758a256 *man/CTCF_TIP_peaks.Rd
ebe80230147fc1597c4aaa753d748afa *man/MotifPeeker.Rd
05fc60809e0adb36846213c81540a2bc *man/bpapply.Rd
6fd6b880539d3674cc5fd335649fa7ad *man/calc_frip.Rd
04aaf614a13793829e155565b935332c *man/check_ENCODE.Rd
8db5df4faecf28efc87b5a34adc9f584 *man/check_JASPAR.Rd
7e9fe9c599e925e6e7c2b6e9e68c9a3f *man/check_dep.Rd
bad7f67503d974e0664720cc3c428ab7 *man/check_duplicates.Rd
e1f01fa622322ada54d0c75072f317b3 *man/check_genome_build.Rd
d816c92811b5b02a4ee0a257dac666e9 *man/check_input.Rd
6fc7511f362afa674bf6f9bc791dc188 *man/confirm_meme_install.Rd
a0115e3dee119e17ae84bdfc13494d00 *man/denovo_motifs.Rd
c4d50627a383d01ccbe1696b5e4e297a *man/download_button.Rd
82c52f42fb0bbd9991c3c5f7a1acb3bc *man/dt_enrichment_individual.Rd
14e2aec8a59838e87f24549233aa36ed *man/filter_repeats.Rd
af5d5704faf2bf4198d54b6c03f1edfa *man/find_motifs.Rd
22a8829e6372410a2ed63ecbe462335e *man/format_exptype.Rd
415e71a291ab0793ed7989446c11d47d *man/get_JASPARCORE.Rd
63a283d5615d7709e0560eb8d76c52f2 *man/get_df_distances.Rd
a80d8c013b27693f8704a2f3a68d969a *man/get_df_enrichment.Rd
3b03ee1d554beced8dba569d09a8d818 *man/get_download_buttons.Rd
c0443d4ff927c9a2f19915662ba60047 *man/link_JASPAR.Rd
b34dd329013a24cfcf5d877693d81862 *man/markov_background_model.Rd
e8e1f9e6f045b5d63991333ad4451fe8 *man/messager.Rd
a43f97bde175f266e7465a93d68bf935 *man/motif_MA1102.3.Rd
a3c25fada82ee42c91fd555bb86a074f *man/motif_MA1930.2.Rd
db9b29a0fd64a4786b10d1ec3125c17d *man/motif_enrichment.Rd
275f4e713a2e9034a013dba8fe174a0f *man/motif_similarity.Rd
ba63931cd7383fd177ab83d733b0f68f *man/normalise_paths.Rd
cd312152d8c075cebb1a8afe5b8ce2ad *man/pipe.Rd
f8592da5ed0970480d38375072e53ea2 *man/plot_enrichment_individual.Rd
7875fcb5a640fb51ee9efa569a1f6c72 *man/plot_enrichment_overall.Rd
940cab522d30097b679603401f766f15 *man/plot_motif_comparison.Rd
e0514a7290f83d69ea25edb4f862b2ad *man/pretty_number.Rd
4de176a50700fabe14ba762486855343 *man/print_DT.Rd
5461658ee61800e0b33c9b461a1d5534 *man/print_denovo_sections.Rd
be8ed4be4918ac44a41196eafd26e4f6 *man/print_labels.Rd
303f1b8cc4dc6dc20fbdbd04db4bb6aa *man/random_string.Rd
2a90db4476d91c093f2eaf56210b67c7 *man/read_motif_file.Rd
bae788cdae18130ecaa6fcc46d0a287e *man/read_peak_file.Rd
b983b9f1b54e61fc13fbf8a06519530c *man/read_peak_file_macs.Rd
5f72ef2c471370061b47d05f8cf8ef72 *man/read_peak_file_seacr.Rd
2e30c0f3d0291e6875962909a6da9f82 *man/report_command.Rd
97340b44f7d73b900555f837113b8f8e *man/report_header.Rd
7d7c2f94235efbc200a5921ae4d00006 *man/save_peak_file.Rd
10d70bf79546f0309258f1033945f029 *man/segregate_seqs.Rd
cccd57106bad7dafc4934b4993e3e9bc *man/summit_to_motif.Rd
b3b4add291382c74f8a0c387fd8c0cd9 *man/to_plotly.Rd
b2c209f0910815d3fb3b4f6a799eaa49 *man/trim_seqs.Rd
1667d3951a3af77c3440ecd49e61c0ba *man/use_cache.Rd
41176f5e0f90d8d675702e1eb15d3b1d *tests/testthat.R
2dc0e4b7d10d741d96e76772508223c3 *tests/testthat/test-MotifPeeker.R
5a4e982b52bdbadbe8625aa226642528 *tests/testthat/test-bpapply.R
7a43bd222f63c79b725e7cb0b7fab688 *tests/testthat/test-calc_frip.R
c4a9a6be4ae7a8ca8424dcc9eef68a2e *tests/testthat/test-check_ENCODE.R
a60397915b59b82f0cc9c56545289bee *tests/testthat/test-check_JASPAR.R
74195ed08530d68d3733721d47818fcf *tests/testthat/test-check_dep.R
74c832478694d74f787c031339bee36f *tests/testthat/test-check_duplicates.R
d473455edf076f60a3c6506ee4b77297 *tests/testthat/test-check_genome_build.R
a7b79938e31177461d7d657bb8067835 *tests/testthat/test-confirm_meme_install.R
15d7eee7c079c196f66fee8746b1ca52 *tests/testthat/test-denovo_motif_funcs.R
2ec7ba15b45f9c2420fc8d6b16bbc4f1 *tests/testthat/test-download_button.R
08a3caea91d775bb7a3de190f98d1d14 *tests/testthat/test-enrichment_funcs.R
098306f1a7b0414c689dfee19ecf67e8 *tests/testthat/test-format_exptype.R
1740a49934382607140e8d51d61795a1 *tests/testthat/test-get_JASPARCORE.R
10f4ae8ae32e9b89a446fe09860b5e48 *tests/testthat/test-get_df_distances.R
1f3c4db9e73e718a9be3c017c9916710 *tests/testthat/test-markov_background_model.R
09c0911fca6405dee4d86d6d83381e59 *tests/testthat/test-messager.R
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a9b275e0dc91267142275b0052c9b10f *tests/testthat/test-pretty_number.R
4f7090cce513fb3f3d013e2116ea1781 *tests/testthat/test-print_DT.R
aa0b1670e4924859fb658730687f164e *tests/testthat/test-print_labels.R
ef5a131becd6660f25b033f686be56eb *tests/testthat/test-random_string.R
94b3e5b2fe33f9fccdc1d1dab4cfa86c *tests/testthat/test-read_motif_file.R
72fc8baf7d052a4b6ff2cdc4ebeb1a6e *tests/testthat/test-read_peak_file.R
eda6ecdc4a614de1903b044e20d00b57 *tests/testthat/test-report_command.R
3dac5b3344ab60907033b79f951cc706 *tests/testthat/test-report_header.R
243a74a9570d11062d49f6b2e84823d6 *tests/testthat/test-save_peak_file.R
c8f429fe470aa7ebef12e1310003bced *tests/testthat/test-segregate_seqs.R
4056f5c058cd1237d1cabccfdc59acb3 *tests/testthat/test-summit_to_motif.R
f8fcb46761e6fba04c93207275c27866 *tests/testthat/test-to_plotly.R
84a5ee6b0982ddc3d3336a728e528c26 *tests/testthat/test-trim_seqs.R
e17111444b8bf4343b73aabe4e29867d *vignettes/MotifPeeker.Rmd
0b28f0833b517c3eef8c563d4f4b2821 *vignettes/articles/docker.Rmd
307c79e7582b72f9c491634ddae4fddc *vignettes/articles/examples.Rmd
07cc4b72463ebd1f2c4ba92633b43a1d *vignettes/troubleshooting.Rmd
