450898da42a0f7f1f8be5c5adcad4cde *DESCRIPTION
f33baf5a04757fbf0d9c4d786065f306 *LICENSE
b43733762ba7aa6d760a812ca911b72e *NAMESPACE
d90cb09d3d4c2f5a97d40abf93cae676 *NEWS.md
8f968259c6ae9588d8c160ea59fcbe1d *R/AllClasses.R
4ef3bf5eec4711690e7c7b914dd3b9f0 *R/AllGenerics.R
a42129b1f4a8808fe8ab128a8b1218d6 *R/MoleculeExperiment.R
8e699c43d314dca271c5b7d2684d9fbe *R/accessors.R
5e1ad56970156151eecf01d85258f5f8 *R/bufferBoundaries.R
97e962aa35fcda79e1f6cafef4990c8d *R/countMolecules.R
27ea7703479bf55d14cbe61a675fd8f6 *R/data.R
89e3607772523b3dccf7d24f9c326a00 *R/dataframeToMEList.R
0b6f17aa2bd4e4ea17578719653f4da2 *R/other_methods.R
1bf04b90fec275a0b0c6930b9c59828f *R/plot.R
03a958e49b7f8d4006d318663853bdce *R/readBoundaries.R
1eedb55210c8f7bb5b1fcb994ebffa9a *R/readCosmx.R
eb61df68e56f9ca3ca01eaaff73fdc55 *R/readMerscope.R
e1eed5f78966e292739c5f7d5cc03694 *R/readMolecules.R
06146ee0495aff76962f855c35ef65f7 *R/readSegMask.R
dade519c1a097b45e418d987d9ec968d *R/readXenium.R
9cdbe81b65ef48b4ab9616e34dcbfe80 *R/subset.R
5b61204c6e44261c86737398c20b3cd0 *R/utilities.R
18b31dd02d35423780a0a4f20d56b1cf *README.md
471fc0f496d680f15fe2baeb0caa3181 *build/vignette.rds
92bda79e88cf7facea5ab4b982244f12 *data/datalist
8dee37ec7205bfd979c44af8aa2495e2 *data/small_me.rda
bd0e10493901e2659bc0104a324297d2 *inst/doc/MoleculeExperiment.R
4565a52b1dc152f2e8d8c3965485ad1b *inst/doc/MoleculeExperiment.Rmd
dc3628af465e871c2e98fcb868464afb *inst/doc/MoleculeExperiment.html
1da08f575b4dcf46750d7b624cc3d369 *inst/extdata/BIDcell_segmask.tif
f8ff6ac4503bc054ed6e17ce1ad015dd *inst/extdata/README.md
d765427593c8adc081138486aebb577b *inst/extdata/nanostring_Lung9_Rep1/sample_1/CellLabels/CellLabels_F001.tif
d765427593c8adc081138486aebb577b *inst/extdata/nanostring_Lung9_Rep1/sample_1/CellLabels/CellLabels_F002.tif
189732cc6a34439f8b409567a3feb1df *inst/extdata/nanostring_Lung9_Rep1/sample_1/fov_positions_file.csv
ad04d3e5ddaaf3f8e47dbff42f2d17bc *inst/extdata/nanostring_Lung9_Rep1/sample_1/tx_file.csv
0084ac6becdce81cc162143414d7f0da *inst/extdata/nanostring_Lung9_Rep1/sample_2/CellLabels/CellLabels_F001.tif
0084ac6becdce81cc162143414d7f0da *inst/extdata/nanostring_Lung9_Rep1/sample_2/CellLabels/CellLabels_F002.tif
4f599a50742adb5b2e371a7939f931f4 *inst/extdata/nanostring_Lung9_Rep1/sample_2/fov_positions_file.csv
471138c228d46833bf7cb8122a65aeb3 *inst/extdata/nanostring_Lung9_Rep1/sample_2/tx_file.csv
fd6ba517938316351c76ff9faeabccc4 *inst/extdata/tiny_brain_shape2.csv
b4e5474dad1f0b106f34b46877c402d4 *inst/extdata/vizgen_HumanOvarianCancerPatient2Slice2/cell_boundaries/feature_data_1753.hdf5
ab81d76b81561bdb4ea29a67491f70b7 *inst/extdata/vizgen_HumanOvarianCancerPatient2Slice2/detected_transcripts.csv
cd29d6a232121d30e730a004efc17180 *inst/extdata/xenium_V1_FF_Mouse_Brain/sample1/cell_boundaries.csv
b475556b892a11c646eed4ddc74a0175 *inst/extdata/xenium_V1_FF_Mouse_Brain/sample1/experiment.xenium
1a1c8fb2062685c2d4628869ee1edcea *inst/extdata/xenium_V1_FF_Mouse_Brain/sample1/nucleus_boundaries.csv
2c4b1edfc5b5674a612bf4619a96adc4 *inst/extdata/xenium_V1_FF_Mouse_Brain/sample1/transcripts.csv
0123db503b4f739e9bf10b5215e076dc *inst/extdata/xenium_V1_FF_Mouse_Brain/sample2/cell_boundaries.csv
96942c15cee780f1d5125e14bc546693 *inst/extdata/xenium_V1_FF_Mouse_Brain/sample2/experiment.xenium
7ab951104cbe7b1f0bdde813a520dcea *inst/extdata/xenium_V1_FF_Mouse_Brain/sample2/nucleus_boundaries.csv
a40b879c2d64910606f78a94d8bfdd43 *inst/extdata/xenium_V1_FF_Mouse_Brain/sample2/transcripts.csv
d704b7c4005dfaa0c42c12e1055bf7f0 *man/MoleculeExperiment.Rd
aaede73371a6bd8e38607098bcce0ed8 *man/accessors.Rd
8cce4cc3d7978c12a0767d4906634d36 *man/bufferBoundaries.Rd
6f1d0f74f250be4693a3f45d9b91c8f5 *man/countMolecules.Rd
380ede44b184740d81bd6e4bfa6b80fa *man/dataframeToMEList.Rd
de5541ddfd7ddb08ceb1b758b0088834 *man/dot-generateBPParam.Rd
b03fa8c8cc09a8d741858a4f5f859f89 *man/plotting-functions.Rd
4ddceccd82bed833dd9e3efc707dd184 *man/readBoundaries.Rd
a547e378d35dd98cd7d32b3da67ce4ed *man/readCosmx.Rd
9a22685a891d30d71596f10d5ba8aca8 *man/readMerscope.Rd
da8f6f7e793a6663aed1ae49e81040bb *man/readMolecules.Rd
0d4e76f046d30f94bdefed29a5b79d65 *man/readSegMask.Rd
bd1100919bfef247917c5d6116ef025e *man/readXenium.Rd
e720554f012bd2750d028f0c2d4923b9 *man/small_me.Rd
96ba49c0c51bd76c11e15c188b517ad7 *man/subset_by_extent.Rd
f933159d88b0fa295ffd8b292cbc0584 *man/summarization.Rd
cc19a2854f084b5917b0fcbd205d91df *tests/testthat.R
17bd31a9a5b0b4ffac92f462000b3bcb *tests/testthat/helper.R
d627c004a6d9068d162af04976944bc5 *tests/testthat/test-accessors.R
ee94f5ff43ef55eca914cd6481095b7c *tests/testthat/test-countMolecules.R
9c78cdd6c43668e762644fd35c3c81de *tests/testthat/test-dataframeToMEList.R
53e731794d5c119d32f2875c971fa76e *tests/testthat/test-readBoundaries.R
c23343b938f8f500446b8a4487d0a9d8 *tests/testthat/test-readMolecules.R
cc3dbbbf0b6b4cf11fb582b884eb4c31 *tests/testthat/test-readXenium.R
4565a52b1dc152f2e8d8c3965485ad1b *vignettes/MoleculeExperiment.Rmd
3ad87cbcc298704aa487f71936663b29 *vignettes/napari_screenshot.png
