733a52e686dffee065d9dff248574924 *DESCRIPTION
3000208d539ec061b899bce1d9ce9404 *LICENSE
30e131a2c3e1c8e23cddea0cbf3e5570 *NAMESPACE
7db87cf3db1ddf0a7e3e4cc3f10e34a1 *NEWS
b8761d7cf7129078e406332e9a38c710 *R/ModCon.R
050d455da5eab740ff9f853fdb03c6be *R/calculateHZEIint.R
3acc6aee16790791515f5cb9507bb65c *R/calculateMaxEntScanScore.R
11a498de5c0b4cedec569d7f92d63aab *R/changeSequenceHZEI.R
b244b1211099818f60fc5d45ce61cdc9 *R/createCodonMatrix.R
f9d74176d0062c31aa1d0119c02f860d *R/createFilialSequencePopulation.R
8e8ef11d931515f50f72c90ac6221e7b *R/decreaseGTsiteStrength.R
41921793d62601b620c70826c5b50fc2 *R/degradeSAs.R
c5099f9a00b3293146288f3997174dc6 *R/degradeSDs.R
fd3f9a0b8e58bf33cb2995918e635f45 *R/generateRandomCodonsPerAA.R
40e23abc04a6fdd3063c6af37f3099e4 *R/getOverlappingVectorsFromVector.R
95db16438ac41ae9229c403120880657 *R/increaseGTsiteStrength.R
3352e8d8d0dbaca0f5490ecc24650df9 *R/mutatePopulation.R
7d667e36199f5b273aab961f768c0ada *R/recombineTwoSequences.R
aacfb7f488d4284a4f55ca9abe9c9684 *R/selectBestAndMean.R
dfa6eaa92ea9317a4ee6d977d346dbbf *R/selectMatingIndividuals.R
5767f6dc2b0d7e65bca7a100fba68d8f *R/slidingWindowHZEImanipulation.R
8c9dd9c58961a93149219ace7dce64f3 *R/startModConApp.R
9c074ded176e65559d66a49d655b5600 *R/sysdata.rda
b7e50f68630f5f44bc50fe8e7b0a0ee5 *README.md
58af9603ae47239a6302ae0247d668ac *build/vignette.rds
411df5903bf039205f58e3d2ce9f4996 *data/Codons.rda
afdfcbf036defde79ff303d93b1df0f0 *data/cds.rda
1c17a4a3e34efb97188caa85c6e09b71 *data/hbg.rda
fe77f71c959f4c12cdb9437211e0a46b *data/hex.rda
e0f422112a05e8ed3a739692108cbbcc *inst/doc/ModCon.R
8db6f21f72fd2e660237cef04b09b5bd *inst/doc/ModCon.Rmd
d5cc2cd26eb7c506e911539e1b874773 *inst/doc/ModCon.html
0e3daf92c0aed69a8c78d6668cb79431 *inst/extdata/me2x5
4d11c52bd47b7a6b59b6338b4f25378c *inst/extdata/referenceDnaStringSet.fa
519d6313138dee56c33063dbc9300cee *inst/extdata/score3.pl
3b0b3ff5e1af1fcae9385d3e1fd03ff8 *inst/extdata/score5.pl
b193eef9bd40086691021a2d19c2c5de *inst/extdata/splicemodels/hashseq.m
98e8f71ae37c12e445f3a21fcd8467a2 *inst/extdata/splicemodels/me1s0acc1
ed976352b5f3de894b60fa2ea0213cc9 *inst/extdata/splicemodels/me1s0acc2
93c94296500c37c70e74b295f6ff1578 *inst/extdata/splicemodels/me1s0acc3
83b8104e0080210fd0a96cda88c4f62d *inst/extdata/splicemodels/me1s0acc4
6d26531c6720902a85cd30d13c165b37 *inst/extdata/splicemodels/me1s0acc5
403edfcea636de389912605d2bdc93eb *inst/extdata/splicemodels/me1s0acc6
b0525d474309a2bc08b3216967d0a436 *inst/extdata/splicemodels/me1s0acc7
3935b25a6f4f63e3e2fea6bfc5a0c65e *inst/extdata/splicemodels/me1s0acc8
0f3b8a65c043fb53cc8aece8cb5b1ef8 *inst/extdata/splicemodels/me1s0acc9
c13a0c34bc8247f323b523eec99e811d *inst/extdata/splicemodels/me2s0
0a4dcd11bce05f9706f33505f223eeac *inst/extdata/splicemodels/me2s0acc1
8565b8edb7f9582b4a23a58dbd11477e *inst/extdata/splicemodels/me2s0acc2
057916e5bac481c3b36a652dcebe5838 *inst/extdata/splicemodels/me2s0acc3
09ba0ad8055b7db2f84dcf418e3d68e1 *inst/extdata/splicemodels/me2s0acc4
1675124a3e906b6eb7051923c42035cc *inst/extdata/splicemodels/me2s0acc5
26e468f9476bb5d25cc3fca948738535 *inst/extdata/splicemodels/me2s0acc6
5f35e846137a18d4fcc63bc892d4153a *inst/extdata/splicemodels/me2s0acc7
bae0098c03adfdce1ff13a13eadd3897 *inst/extdata/splicemodels/me2s0acc8
1d733af14d438dc9dcdcddf51d841457 *inst/extdata/splicemodels/me2s0acc9
00d620b842d47e8348440f8936ff6143 *inst/extdata/splicemodels/me2x3acc1
cf36592d00b1e69eab00e0cc1f3cecaf *inst/extdata/splicemodels/me2x3acc2
136b3eaf2b7f78d0da78d9d4be53368f *inst/extdata/splicemodels/me2x3acc3
3a19125ed5b0f4a5ace7d048f9e005fe *inst/extdata/splicemodels/me2x3acc4
4e234dd1e58b04b499499f3244502e74 *inst/extdata/splicemodels/me2x3acc5
df85b498edd7d4692c04cab8c01ae917 *inst/extdata/splicemodels/me2x3acc6
f139698d62743bc816b5d4281071c657 *inst/extdata/splicemodels/me2x3acc7
1d2462179e567b1c7beb2f6797e53e07 *inst/extdata/splicemodels/me2x3acc8
36f1e98760a6c3a3e31b4e4a3071ab68 *inst/extdata/splicemodels/me2x3acc9
0e3daf92c0aed69a8c78d6668cb79431 *inst/extdata/splicemodels/me2x5
1a1518daba4e02f757811869cb4bcefd *inst/extdata/splicemodels/splice5sequences
97bbfcf2fa23fe249a79e219b1c0e3c6 *inst/extdata/test3
a7b00a84f65a525305a5fad91b4bbc61 *inst/extdata/test5
37a5505ca57fca0637fdde5220ab267c *inst/shinyApp/app.R
947d1146bc2fbaba735dd7b39c065cdc *man/Codons.Rd
a2c8ba0e4263d018bb98535be32e7cf8 *man/ModCon.Rd
62dd77b3cc0a5748b99fd1c41075fd20 *man/calculateHZEIint.Rd
21c1d3658ef875e7b442f15b68172b7e *man/calculateMaxEntScanScore.Rd
e01807a851bca0984ff94e498a09895c *man/cds.Rd
63085d0283f9f9eea17c71033a6d1824 *man/changeSequenceHZEI.Rd
1d958066ebd1f708b086b135553cc176 *man/createCodonMatrix.Rd
14c85e85df0b8773dc18dc1a21367d5b *man/createFilialSequencePopulation.Rd
1a585afb62b443e618bb0b4aa6a74fd7 *man/decreaseGTsiteStrength.Rd
99124126d66128fd385c287180fc772c *man/degradeSAs.Rd
2c9e57f9883512f7bc573faa7672f898 *man/degradeSDs.Rd
c6525d11f2d137d4025240653084f371 *man/generateRandomCodonsPerAA.Rd
466aae730e3a022dbd61de1ba98bd680 *man/getOverlappingVectorsFromVector.Rd
47ae25a3601f787705a6baaba0250afb *man/hbg.Rd
40d31eebe728b83945e613cac4e682f2 *man/hex.Rd
00834ac8b8fe1e24052eeba2c7e2e9fb *man/increaseGTsiteStrength.Rd
64cdebb7455ed6ceb05a3391adbc2669 *man/mutatePopulation.Rd
d4b31c17f3bfffbcf87e34268c205dca *man/recombineTwoSequences.Rd
e1eab41f3a44b949208b5c850eb20c14 *man/selectBestAndMean.Rd
be2e8a6e530f476c52cbf21d44842dd9 *man/selectMatingIndividuals.Rd
90d8117d04df51e255a40e5b9ae7f214 *man/slidingWindowHZEImanipulation.Rd
be66f818cba8dfdee44a966a38fb6859 *man/startModConApp.Rd
1a7a6ca3b65151ad7e15a0ccf773fa89 *tests/testthat.R
deea60b0260914b61090808368b58f2a *tests/testthat/test-ModCon.R
ddd42ab48a7371b3a949612a3417274e *tests/testthat/test-calculateHZEIint.R
3260d3081efcbb5c80803868638f97a1 *tests/testthat/test-calculateMaxEntScanScore.R
351c252a83e224bde16891c23436bc03 *tests/testthat/test-changeSequenceHZEI.R
22a9616976d1356555490124fd281c3c *tests/testthat/test-createCodonMatrix.R
2bc9e88675b0e4e344893e8ce0ab8485 *tests/testthat/test-createFilialSequencePopulation.R
f53bf41aaeb231fb2e8cfc678f90e3a2 *tests/testthat/test-decreaseGTsiteStrength.R
da0e1c766c432730ecbf791131372853 *tests/testthat/test-degradeSAs.R
d131037fa6db38f9178e9e313b5886e9 *tests/testthat/test-degradeSDs.R
cf98387818388c54a2eb1ddafe6047e5 *tests/testthat/test-generateRandomCodonsPerAA.R
ac63120bff149d51f220d5d164ebea18 *tests/testthat/test-increaseGTsiteStrength.R
7787aa4e6042a1c3bc6ce52eec73c0fd *tests/testthat/test-slidingWindowHZEImanipulation.R
8db6f21f72fd2e660237cef04b09b5bd *vignettes/ModCon.Rmd
