aa5bed315c642a2bf22d6a9324199706 *DESCRIPTION
df390c53434517b304ac5db487184641 *NAMESPACE
4f594556e80404ca38ad9832749ce52a *R/cle.LS.R
ee67dc17154c69202701e8b794146d6c *R/msea.kda.onestep.R
f682cb914648a0de8b58a3de6a15b465 *build/vignette.rds
da78aba5aea91f0e3f6b53b6efad9f8e *data/job_kda_analyze.RData
6f9de4d5ca9b3b86857cf8f2bc762546 *inst/NEWS
e62085507515681ed33b825ad1b79db6 *inst/doc/Mergeomics.R
11a9541d5cafec98cc8bc058a98fe381 *inst/doc/Mergeomics.Rnw
2d7dcc5c1c5f7fa9a977029c40b121e5 *inst/doc/Mergeomics.pdf
ed89152dc6451d1d04159f8de1cf609c *inst/extdata/Significant_pathways.info.txt
f5ea84e757b6d176a7cec6cf09bca85f *inst/extdata/Significant_pathways.txt
5e3e15e863527708113624dd37931dc8 *inst/extdata/coexpr.info.txt
6617f6984e29069d6b397b7a520ef916 *inst/extdata/genes.hdlc_040kb_ld70.human_eliminated.txt
de7f208146b4e71c972c95a4ce1cf471 *inst/extdata/marker.hdlc_040kb_ld70.human_eliminated.txt
f931c74c15400e4294fc174d5e4992e7 *inst/extdata/mergedModules.info.txt
d8493b101a448940861ce3a2e5425416 *inst/extdata/mergedModules.txt
398a0515911003899d5863f70358ec83 *inst/extdata/modules.mousecoexpr.liver.human.txt
ae790226d5834ef4e58a3189d53eb8be *inst/extdata/msea2kda.nodes.txt
e4a40b71b0313c6ea76eb67f12e92a98 *inst/extdata/network.mouseliver.mouse.txt
0231e4f7adccb9a0d25901f216ecd2a5 *inst/extdata/symbols.txt
c8179a9624cef5581a10c99349358f98 *inst/unitTests/test_kda.analyze.R
8590194aeb21d93b30bd2064ec72047e *inst/unitTests/test_ssea.analyze.R
b1f0bc54db77a42516b349f320b5695f *man/MSEA.KDA.onestep.Rd
b4563faa374755aeee4aef3b8151ec4d *man/Mergeomics-package.Rd
66bbbf5013394fc5594a3dc68259aa5c *man/job.kda.Rd
60fad84ec4eee65136034368a9d3e74d *man/kda.analyze.Rd
740aab51a7352505158ad21f295d3b23 *man/kda.analyze.exec.Rd
532d2e35e15621f34d9ff69e600c3573 *man/kda.analyze.simulate.Rd
f07d0512e62d7bb0a080855efb9d221b *man/kda.analyze.test.Rd
e7249e7d60358c4edfb2817d92427b5a *man/kda.configure.Rd
1ec1eb4786fb9eeb9e1e3aceb0ed82c1 *man/kda.finish.Rd
63f4e435b98e1d5fa56424131d66b0a0 *man/kda.finish.estimate.Rd
68f1c694ae550a4f69196be23faa2c16 *man/kda.finish.save.Rd
e91e5d883de811b08e0004fe6c716e4d *man/kda.finish.summarize.Rd
a769f08294d5c22391d2ffa029c38cea *man/kda.finish.trim.Rd
b4b5b4c1f938caf927762e0d4969d8bc *man/kda.prepare.Rd
1142c7ee28ce719b6936c0bff7c941cd *man/kda.prepare.overlap.Rd
1437f824b5d18d62faa2ec0ae601ee27 *man/kda.prepare.screen.Rd
06679eabcf1dbe94a1d83a4d077303b9 *man/kda.start.Rd
6bb75e5922760c47966643eda2c792f6 *man/kda.start.edges.Rd
c82738610b2bd2d7362282d961a7c85e *man/kda.start.identify.Rd
8d9c884e38b3843e393bb61337a9c139 *man/kda.start.modules.Rd
8e15450710dc9f06f1e6d64fab224853 *man/kda2cytoscape.Rd
ae9eb12f4682c87dfb16da9c69fbe0c1 *man/kda2cytoscape.colorize.Rd
087cfa7deeb4c917ac1cdbb008d93646 *man/kda2cytoscape.colormap.Rd
acd4c317de3b87c1b0a39ac26e413aba *man/kda2cytoscape.drivers.Rd
578cb1534fb7b964fc5795d6a5d7af8b *man/kda2cytoscape.edges.Rd
a8c210f8088ef1a6599be42c7a4902d2 *man/kda2cytoscape.exec.Rd
1c258c7aa44999040553a8d9e437507c *man/kda2cytoscape.identify.Rd
6de3c5647b226ee029c51fdd12e500c2 *man/kda2himmeli.Rd
4b75d5f94fcf24fa1d8589b42dca4590 *man/kda2himmeli.colorize.Rd
5bcc6cc4f1a5ba6db72a4a56a056a7f3 *man/kda2himmeli.colormap.Rd
84216a1b925dec953472a67fe42a1773 *man/kda2himmeli.drivers.Rd
15ec4ac2daeb4390e57e19a33270a881 *man/kda2himmeli.edges.Rd
f5e0d322794be3f7487763547d11e3e1 *man/kda2himmeli.exec.Rd
e2d670c969f56c8b63ed377a86237d52 *man/kda2himmeli.identify.Rd
153a2767ff7cb78bcf9fa2317544619c *man/ssea.analyze.Rd
95b520c3649b65c741515f382362ceee *man/ssea.analyze.observe.Rd
ddea1b7cbfccc3b28429cc5de0677e89 *man/ssea.analyze.randgenes.Rd
317dbf4745b86c8aae559b16e978efef *man/ssea.analyze.randloci.Rd
6c3a365a886ae901af234fda6768c74f *man/ssea.analyze.simulate.Rd
a1971afbc48068a90c4de44622acdfad *man/ssea.analyze.statistic.Rd
0e1ad0e537511a13e5751a0e495d8711 *man/ssea.control.Rd
c3287580c858e5ebfa2aed22afd760f8 *man/ssea.finish.Rd
6e15003f1dcedd50ed3cea33b33c78df *man/ssea.finish.details.Rd
7e891330b0b51e6e996ee41cf1bcc38f *man/ssea.finish.fdr.Rd
66d6499b3f2b46b66c9d44945f69647f *man/ssea.finish.genes.Rd
a8241308aaff2d0ca0b7b14f277f5717 *man/ssea.meta.Rd
539e1632a452959dacf7ee1d6e7be6a0 *man/ssea.prepare.Rd
e42fdba4834a9a932a43420537de420e *man/ssea.prepare.counts.Rd
bbe5d564cdd76468cdcf422a1b9b434a *man/ssea.prepare.structure.Rd
33c36fbf1b6d7ebeccce6e666bc47b91 *man/ssea.start.Rd
3074c9134422d2bce47805a4a9c1f494 *man/ssea.start.configure.Rd
2f155c95d4ffe61be94377da02b68c61 *man/ssea.start.identify.Rd
2925ceac8edd4eea327c9208c43dd866 *man/ssea.start.relabel.Rd
adc59efa7200d5568b19447ab3699164 *man/ssea2kda.Rd
058b0321645c98bef76fe10c4d53c869 *man/ssea2kda.analyze.Rd
c8c026faaab5da8c4670fd7658b3ab5f *man/ssea2kda.import.Rd
0d9a62354b3e7d051e1dd25a1d3cba7c *man/tool.aggregate.Rd
231689ce0aeda3f0b440e002abf83882 *man/tool.cluster.Rd
ebd20c32e2ca72bfdd6f2d31341e66a1 *man/tool.cluster.static.Rd
14c566641daa6740b60fd1e3f6482e6b *man/tool.coalesce.Rd
5e0d848188d5cf91112685a4e8ab73a0 *man/tool.coalesce.exec.Rd
cef1229e338adc729251bc0518449a32 *man/tool.coalesce.find.Rd
cca3bf97af9acab256aad1c93b222539 *man/tool.coalesce.merge.Rd
9c39517c99061b202910a5ba907734d2 *man/tool.fdr.Rd
df71b64b91caaf0ccccb93852005ae71 *man/tool.fdr.bh.Rd
6fecf3509265ea93e939e70d54b1e0d9 *man/tool.fdr.empirical.Rd
fe2080a808bcbb2a776f0e1ee620d3fd *man/tool.graph.Rd
f5f90dc21037e1cc12dab40cefdaa653 *man/tool.graph.degree.Rd
72f77230db7b4ea6d485dbee47de9392 *man/tool.graph.list.Rd
8c394b9a4a548052a2f67795d4d9cea8 *man/tool.metap.Rd
6999f77dd596c662255c5ba4f5005742 *man/tool.normalize.Rd
a512258875399c0a0760ff8cba1a80d1 *man/tool.normalize.quality.Rd
7a6b7076a9bd415ffea79a4d065dccdc *man/tool.overlap.Rd
b8ac2c1f683636fcf47d19721d74f2e9 *man/tool.read.Rd
c4f4e8742babd0c24ca2201ac651b26f *man/tool.save.Rd
e53f1086bdd0c5ee13fe3afebe7b6ba5 *man/tool.subgraph.Rd
50fb990aaa0d64a2cb37fc03fc17ad09 *man/tool.subgraph.find.Rd
3330a1149eb96e0181e4c19a9bbf8adf *man/tool.subgraph.search.Rd
f6303c793deb1b636319e24feee9f65c *man/tool.subgraph.stats.Rd
11a1c50424e8c3d0805f150b9077336a *man/tool.translate.Rd
2813a86d619c29e2ddc2299dcb81562a *man/tool.unify.Rd
1c1e352eaaba7b9f41f71c363f6abd47 *tests/runTests.R
11a9541d5cafec98cc8bc058a98fe381 *vignettes/Mergeomics.Rnw
a999f69ebc50cdd3c5e077644ec1c089 *vignettes/top5KDs.png
