8c79a58e01b1b0414ecb695224e302d1 *DESCRIPTION
1bb0379f2577a205d7b8719a481a327b *NAMESPACE
d0fb148b2058e9bb1c28c2647d444eb0 *NEWS
1b1f9f5669df7a9f3a5db8b4d13af158 *R/MpraObject.R
2015cb3496e5258a4f48b676dfa244dd *R/accessFunctions.R
629099e98f530ea7ae859688c70eb9de *R/analysisFunctions.R
9e7052f05ce37b06f6d32e9105c7cc39 *R/data.R
8322aa63c30b6402e70dacf6dd4bc9ca *R/hypothesisTesting.R
3436d5a4e2c3bcaf167baef10656c451 *R/libraryDepth.R
e7739a274bd42d188d7eae4599a66291 *R/likelihoodFunctions.R
194a9a179a77f89b00bd5ca65bcd2326 *R/modelSelection.R
b978fd75244e5b07d93558b0028f2c44 *R/objectiveFunctions.R
7b68eda390214ca73ad55260083559ca *R/optimizers.R
ed0a77f3abab8b7de0daba37b0c302b0 *R/simulateMPRA.R
836dc295af8008e32b1e03650ed956f5 *R/utilFunctions.R
94d94bb8ce42d4b1c55ee59f8c237ece *README.md
f54bbac32a12606b556318338fb1c2a4 *build/vignette.rds
60c61bee1d68b8b35a78a2493dbbffb2 *data/ChrEpi.rda
f3262fda7f93ed04c3f1f6ab40ff35ed *inst/CITATION
e566d168189c7a71fdc4c05b0a30d960 *inst/doc/vignette.R
5988db2c649472045121f28e80e4cdc0 *inst/doc/vignette.Rmd
efebfe83093c6d301f0908aa39daff91 *inst/doc/vignette.html
91ace5fd61d07f9acdf9df26420fcede *man/ChrEpi.Rd
be63a98367e071ce9dadcce1b8c92a7b *man/MpraObject.Rd
c6d8dc63bed4a76683d4f9ac54a9c0b8 *man/analyzeComparative.Rd
4a7382509afba17cc393be58382ea13d *man/analyzeQuantification.Rd
09da553bb44eb753f9bddd965aa8ad48 *man/estimateDepthFactors.Rd
6affa9179cb041ef356d2b6330ddbe75 *man/extractModelParameters.Rd
4c0729deab3c09658435406993ecc063 *man/getAlpha.Rd
e093584e9c58a7c7c8f962c74dcfb7e1 *man/getDistrParam.Rd
7291a420dac29b441ad5af970141a80d *man/getFits_DNA.Rd
95cb179e2233771f15e3066ddfdb0fdd *man/getFits_RNA.Rd
f2a2c16c4bc949dc4e6cfaf8b1528ed2 *man/setDepthFactors.Rd
85472605df321fc4b925654f54f5bc32 *man/setModel.Rd
5a6386d6525da13127e2c525d5f9609b *man/simulateMPRA.Rd
78b8cea0a2eaece854c0daaa1577c06e *man/testCoefficient.Rd
daaed8295fc4de8ac004f7766430b192 *man/testEmpirical.Rd
cf05e5b2c2b440799e988d68a38c360c *man/testLrt.Rd
5988db2c649472045121f28e80e4cdc0 *vignettes/vignette.Rmd
