8bdcb5e30d65705edcb912b0d84f1643 *DESCRIPTION
9054fb300fc3a883ba1183d1b3e54060 *NAMESPACE
d41751b43a2fc2246351495752f1b25b *NEWS.md
0f7b76a4871299f6cdbd27c6dc197589 *R/cluster.r
dcc037456448602ae58aae703259d646 *R/data.r
ca5d40ed3f05c416e0e6297c8ff2e3d8 *R/dictionary.functions.R
b21ff4e1b74b92398f36e2a84e5db2bc *R/diggit.r
3c186047b69d8a3f9ed54eb930846fa0 *R/example.gbm.data.r
f2f0992a11cb4dc875d2b8b980d0ee92 *R/genomic.saturation.r
15e28ec785e4cc747aef9984bf40fee5 *R/make.interactions.r
3b6e908ce3e16fd9a97d79187d969f68 *R/make.saturation.plots.r
e21b6028ea00d7a235939e6900e45133 *R/moma.r
34e9138527550ad7e32fcaaa7190d299 *R/rank.r
375821dd6b07feacc8a6eb87a19ee069 *R/sysdata.rda
df8468d32dfcb90a111a09eb72e35f68 *README.md
8e27764c2b8b5743fdd7f3f3b80fab04 *build/vignette.rds
68c07c9725087c9bc2606b7399e943f0 *data-raw/gene.map.r
9c33804489f6173cfb8579adb70591f0 *data-raw/hgnc.gene.information.txt
d8c759b2803cc0b855edb7d1bf236e6f *data/example.gbm.mae.rda
9c5c970aa5b24c4b0563d7f9b06a104a *data/gbm.pathways.rda
48adb9e95a8a7d2fcfe13af3aa181eac *data/gene.map.rda
447ec4556653578a105ac6bbdfc5465a *data/mutSig.RData
8ed0682442c0ae050d86fb67863513d4 *inst/doc/moma.R
5b3f191a72b766534f745fd383bd0495 *inst/doc/moma.Rmd
f0a30e2c7d5f9827b997c68d346057be *inst/doc/moma.html
576c477bdb3035a2eea1002c99e167a6 *man/Moma-class.Rd
5a6c0afd5155ca5ae2788dbf8aef1030 *man/areaEnrich.Rd
3fd6be58ee933feaf2910e9f120f6eb6 *man/associateEvents.Rd
d10b18c929ed5aebd9fe8b415e5e23f0 *man/checkGeneMap.Rd
81008ab5303ce3807818ea65f24e16b0 *man/checkList.Rd
53b29c790f55229ef7dc3915396ec5fb *man/checkMAE.Rd
db40fb22f862aa727451e55c436567e6 *man/checkPathways.Rd
4946af03db5f8e21d8f3b7c5cd0b108c *man/clusterRange.Rd
e5322701fe2adec218508bfb01033454 *man/clusterReliability.Rd
af71995d23d85fe5985c73c8e9635e2c *man/cnvScoreStouffer.Rd
ac555682961885e0c18fd1616b6be726 *man/conditionalModel.Rd
9c1ec0f63d4cc7da34d77eaff8700ee5 *man/conditionalP.Rd
2b2990cfab7ebc19117a20d94ecb916a *man/empiricalP.Rd
966e79aeec7dcb0caa32c0776f907500 *man/example.gbm.mae.Rd
ee4c312d52d51d52ac2ef6af70378e9d *man/fitCurvePercent.Rd
e5486242471b053ae7d35f44e86cead2 *man/gbm.pathways.Rd
32089d9f502e3cfc7f9ef48e36793bc2 *man/gene.map.Rd
0082176d6cd80f4bff1c81d900f92940 *man/genomicPlotSmall.Rd
c1e3661d6b9e74be6ab8d1e71b462946 *man/getCoverage.Rd
fd91cfb86e7c39ec442a27226078f0f8 *man/getDataFrame.Rd
5ce0f6a31edd64c945923a84c52aa2b7 *man/getDiggitEmpiricalQvalues.Rd
b1541ebb88af914e209c417be57f50e2 *man/getEmpiricalQvals.Rd
5e14f328b2ee11f8ba7b699255efebe4 *man/getPvalsMatrix.Rd
19cf3c997bd49edc2ebeaa0fa6e0cedf *man/getSubtypeEventTables.Rd
8ca40b527521e7d6224f04b8ddd97150 *man/integrateFunction.Rd
e7dec772c55c3fdbaa38a9618061cfea *man/integrateTZ.Rd
2f45cd2add49c17880b31d94d6ffad93 *man/makeCoverageDf.Rd
98976dc2b94a41600666754ef62e417c *man/makeSaturationPlots.Rd
7eb436d44a93ca55cebc9f47abd9524c *man/mapEntrez.Rd
359bc8332c0b40b72d90f8c3b649bdfd *man/mapHugo.Rd
89b3497d5f34c3e482bad2833d2bad88 *man/mapScoresCnvBand.Rd
f37d4b2d029ff7004f5bae789ab7b885 *man/mergeData.Rd
3ca061e17edc41df3a0741883578a455 *man/mergeDataBySubtype.Rd
28eef82178bf1fbf01fd85767b51b191 *man/mergeGenomicSaturation.Rd
c6d8f131d9cfe2dedc42144da34995a4 *man/mergeLists.Rd
41b99a7ac0c736767260b2552c2887db *man/momaConstructor.Rd
d049286613c2083571d993827d3b0b08 *man/mutSig.Rd
9d086fa5fc57d0c9fe53c6d68e29a9a1 *man/oncoprintPlot.Rd
389664db6b03d2d83e592034cd5f9376 *man/pathwayDiggitIntersect.Rd
73cd0dbdeefc64b0454ab048ad23b9a9 *man/plotEvents.Rd
710696974a514ffa7b8bad255d3df290 *man/rea.Rd
39ed9c46e21b852202826dcffbf22812 *man/reaNULL.Rd
af953a0090224395078d8229c8bbdbbe *man/sREA.Rd
319ce7e663a6ee6509d56e7fdd2c7fdb *man/sampleNameFilter.Rd
2130a32669478ea462fed1cfa338177d *man/sampleOverlap.Rd
76a4d2343e805c658427f9180beacdf6 *man/sigInteractorsDIGGIT.Rd
968522f5da5a662fb761b1928aac679e *man/stoufferIntegrate.Rd
089f591c8cafb8459f54fd15742ec406 *man/stoufferIntegrateDiggit.Rd
51bea2dc0a4f82bf7914ddec1a47de5d *man/subsetListInteractions.Rd
4afdaf2335fe4855db1e12a6998115f1 *man/validDiggitInteractions.Rd
a027406161f9538215b10afcac539820 *man/viperGetSigTFS.Rd
20e33a54e4a38e08d9772a1481e5c116 *man/viperGetTFScores.Rd
04e9e00363b647081b3afe574f0c19be *tests/testthat.R
4f5da230d5870e253b73ad5fcb89b7a1 *tests/testthat/test-mapEntrez.R
5b3f191a72b766534f745fd383bd0495 *vignettes/moma.Rmd
