ec6b50bdc103cd0288318fd38d9ce267 *DESCRIPTION
4dca51eae6841624a35b815e4a4c10a6 *NAMESPACE
ddd8907cc5097a0914428f84cd3fdc7e *NEWS.md
ab0da9b75a7dbad212f05cd28cc67588 *R/AllClasses.R
e1ebb335d7c56d66e35ed18d6a5f57f7 *R/AllGenerics.R
dc29bb9240fe8af087ec7baaf7d73ae0 *R/MIRit-package.R
02285fdd2c3b842048092567d838066a *R/RcppExports.R
ea65175e198bde5fc2d15ff500e625ed *R/association.R
e00ac838b139998379c7724865a08a73 *R/batch-correction.R
c44573b7e0e287874daae68d96d0dd12 *R/data.R
a8ff501fab69df2a33c09913470f3a19 *R/differential-expression.R
cad210bf6344747df2ca73cd98b157c4 *R/enrichment.R
31d3986fca9233554f9a0e915adb62da *R/integration.R
fbc440b3d4cb4d2d3802b6db9a912f80 *R/show-methods.R
23759a3dbfa7d7920c0d94b650dec8c5 *R/sysdata.rda
d82b68f723ba4e961c5ababc6515d9f8 *R/targets.R
f55b337b82191827aeff9d7b83c68268 *R/topological-integration.R
e03c7d5fad1ef13e770c57ae073dbee9 *R/utils.R
a7a9d6e672f3c5ce5d831785268c0bee *R/visualization.R
eb17f592dc5b635c97469fdbc3ea1dc4 *README.md
791a15851871accc2aa75062ed48646a *build/vignette.rds
7219cca0c89817573585f04611146e89 *data/geneCounts.rda
ceeb5e4c20a4a7a1a4ee59c9202db0f9 *data/mirnaCounts.rda
bb041efa256a6c0cd0555ad8c8400ade *inst/CITATION
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085c943c1159404fab8633f83d62c023 *man/FunctionalEnrichment-class.Rd
adae2cc551078738b61d679be143fa3c *man/IntegrativePathwayAnalysis-class.Rd
47d5d4477d0fff5f5ef9ac8ac2800b56 *man/MIRit-package.Rd
5445b40086d3dd309a3fd3a60df67b35 *man/MirnaExperiment-class.Rd
af0b0cda321ed1cb333121ec7c709be3 *man/MirnaExperiment.Rd
309b02248484992459512bfc5ed5a668 *man/addDifferentialExpression.Rd
bb84974b23444859336ce13ee99fa9a0 *man/augmentedPathways.Rd
c096a28132659274d8010218093ffb51 *man/batchCorrection.Rd
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4dc9b4121d23a1e082aef92e9dc4b379 *man/deAnalysis.Rd
935e617601e2bb5af920445939820ac0 *man/enrichGenes.Rd
b1ee8d5781156fdd37d1b512ce4d1a08 *man/enrichTargets.Rd
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b4b9eb5c83d154ee6d790249504a1f2f *man/enrichmentBarplot.Rd
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81b78b3a16a25cb16489dbc093f6673e *man/enrichmentDotplot.Rd
33179e764224d14d366638c6258dae71 *man/enrichmentMethod.Rd
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71f53a246c8b98d5a768124910822b0d *man/enrichmentResults.Rd
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87805e8ee8480f474acf8cde7649485b *man/geneCounts.Rd
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54179faea75cb9fbc641da651b03e9f4 *man/getEvidence.Rd
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751622af8c6d68757bbb6c0f9ce6d606 *man/gseaRidgeplot.Rd
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4fa50a618792c2a1cca226b39da4f265 *man/listPathways.Rd
95c2bfe6315409c3207ed7783fac4e98 *man/loadExamples.Rd
d24e56b155bd4d344282eae1e67339f3 *man/mirVariantPlot.Rd
2e5f2332be13fe00f91d7b4c87c4257b *man/mirnaCounts.Rd
172acaeacfbccb602503c3c0ed08bc4f *man/mirnaIntegration.Rd
e05e0130a6a7e40889969577707648fe *man/mirnaTargets.Rd
dab8b21504c331104a1a12604f2560df *man/pairedSamples.Rd
d31529ef3ff5b696cd277ac9ad7b9d67 *man/plotCorrelation.Rd
2de32d836148a8c4e3cc9b42bcd02d2f *man/plotDE.Rd
402b5883d8e0065a9d7582a7c11ae8c7 *man/plotDimensions.Rd
5ee124ebc69eafa3afe122912bac90f4 *man/plotVolcano.Rd
40f458259cb54157a84b9ec6e28c699f *man/preparePathways.Rd
857c00a77c5f88f66b00e226c9e43bdc *man/searchDisease.Rd
ba911680e5a0536ef08a487a8bd07273 *man/significantAccessors.Rd
21c117a4f9568d3f1dc137439374b1ef *man/supportedOrganisms.Rd
0d7c128a68fcb1f2ab31cc904a338fe8 *man/topologicalAnalysis.Rd
33c3b225df4e69abe53967f77ff0d4d6 *man/visualizeNetwork.Rd
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d4cf18d06688587c0e47e780b9be1380 *src/RcppExports.cpp
0cc4427e451a2ca4bc7b95e7ead4081c *src/pathwayScore.cpp
5509123684a72721c931ba5fc3ea50ba *tests/testthat.R
bf891764cb116c73cc6c1bbc69eea2a8 *tests/testthat/_snaps/topological-integration.md
ad7ae762ec72ee4abfc5c49b8d0420ce *tests/testthat/_snaps/utils.md
cf97f56f84a335171622d23632f2a161 *tests/testthat/helper.R
36e78b7890f78a7c101b712939fc292a *tests/testthat/test-AllClasses.R
89e851a6a0bc1499dcb673d6eb51140f *tests/testthat/test-association.R
f76537291e532e21d276b031b8aa107a *tests/testthat/test-batch-correction.R
d65d6b84a007166c809d00c470530eba *tests/testthat/test-differential-expression.R
e820ea8e83c08b1e803269ac66a971c0 *tests/testthat/test-enrichment.R
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4f8de95b5298d85bb72bbaa579254bcf *tests/testthat/test-targets.R
cffaa1bdb73e45cf91c079625afc9d83 *tests/testthat/test-topological-integration.R
fd75c45ab14f22390fae2d82db06fe53 *tests/testthat/test-utils.R
d833332f14bd6ebf517270b1a1d35628 *vignettes/MIRit.Rmd
fabc29cc773613dfa1f9b8b05903c98a *vignettes/references.bib
