c9edb2ee679000a9ddfed7351a3fec80 *DESCRIPTION
1ebbd3e34237af26da5dc08a4e440464 *LICENSE
bcb2d2f51a3ca9de98b26b17e6283d8a *NAMESPACE
c46043c437c164d2915fe1f8582b52b8 *NEWS
6efeaecb224ad00989f7275e4f30a8a3 *R/RcppExports.R
2cf119bccd41b16f64af32a92ab3ffc2 *R/aggregate_components.R
d2b84b8dbffaf1fb1e4326cfef26d843 *R/aggregate_components_pep.R
b95783726979d7f93c08862a752f4979 *R/aggregate_sim_pep.R
ae7ce94d8fb56f600e5a1b8f72a5ee94 *R/build_intensity.R
2503f9786db062f30752a9a945b52cc2 *R/build_peptide_df.R
79490fc0f6ae4aeb8c80a6507371ef66 *R/check_and_load_tpm.R
01712f8084a5539ba7c00fa832f87571 *R/check_variables.R
32c83b13ab031ec378c0eae6a7e5cba8 *R/collapse_pept_w_equal_EC.R
37956332d2e36ff519d0bf0a6c007ddc *R/convert_EC_to_num.R
469a3ec66aeeb4b7dc46bff7ddd41c9e *R/convert_peptideDF_to_SE.R
ddf80f228604ea8ff76e89d0b8796d01 *R/from_MM_to_SE.R
bab8c6a61443a7a6c5d19fb1615cd577 *R/from_OpenMS_to_SE.R
773cc3a180a34b5e595a0e781eb1662f *R/from_UserData_to_SE.R
2e70bece2336a09876920781a9283937 *R/generate_SE.R
5c17e9196c35a8b956c17e8d227c266e *R/get_components.R
4a25994067e04a5f4d006a81401db01b *R/get_list_pept_prot.R
92718b4523b95116dda10a7b193eb967 *R/get_overall_abundance.R
94c14a36253dc8731699c790792a6b75 *R/get_peptides_from_idXML.R
8a1eda71182d689d2488640825d67e90 *R/get_prot_from_EC.R
798ebad617282f9a256cf1c137958125 *R/get_proteins_from_idXML.R
c907c0a291676c57ce8c0e8371b0bfef *R/get_res_MCMC.R
5d5fd6578f04cc3ca6b9f5c6f4e74226 *R/inference.R
22eedc14cd3db72d86a84ffd79409f55 *R/input_check.R
d8ca10103e328496adf79581196cab5b *R/input_check_inference.R
a2c883976235ba3750cbe1dafb004101 *R/input_check_plot.R
744a5add07d1572606b72b306ff3eb78 *R/input_data.R
3006996b9a93dc1b13db42ebd62da688 *R/list_components_for_MCMC.R
8b3bb19b8a288f808df3211ba0a04e77 *R/list_components_for_MCMC_pep.R
7a8f170795bf71757adfd695eb3fc7dd *R/load_tpm.R
beef55b0a93ef9659174b2efcca2109b *R/map_isoform_to_gene.R
d5e6351c545590db9cd0622c7109cfcd *R/normalize_by_gene.R
2ae47ca48b306387e8393ce48fb0ccb7 *R/parallel_MCMC.R
e29e6fb7e3eeb0d8db78d9a394e60220 *R/parallel_MCMC_pep.R
9154d3bc6df1aa5628edd9e33ab088ce *R/plot_relative_abundances.R
b36dceb5fdbfe9c2bad53fc6869cd57c *R/plot_traceplot.R
44f93d2dcf5186b1a8b0d4427a991cf7 *R/reorder_groups_by_nProteins.R
2c5bdbe9ce990487d76eb8f135ae837f *R/roxygen_tags.R
937a3850b01be15ebbab0ec4d0dc512c *R/run_MCMC.R
4737805802c1319f591a08c3c9653be1 *R/run_MCMC_pep.R
75581c8ff68033cc5b336c6aafbf0a13 *R/set_MCMC_args.R
607dc404fafc1fc5d3514163ce6485a8 *R/stat_from_MCMC_PI.R
a76b8504dd53e647e2dbf0907fc0a962 *R/stat_from_MCMC_Y.R
af0777a94b4d36b593ccc989a71a9ea0 *R/stat_from_TPM.R
d83842c48ad5c962cada27eb3f7aef74 *R/unique_peptides.R
fa3773ef9eececdf1d4c6797fd05dfd3 *R/unique_protein_abundance.R
27d4f64908ea6caf444ac6245b66ea58 *R/utils_idXML.R
b0dcac4e1c5060e62e3e66bb99b0c74a *README.md
d33a34fa43ee798130d8ffab50d91cc0 *build/partial.rdb
456165a2533bea37328ab8424f5c51f4 *build/vignette.rds
91222aca5b4f5f5a68796f65e6f314d2 *inst/CITATION
a33bed63bb6d3e7d65a5b28e77c676db *inst/doc/IsoBayes.R
fc686563d7242bc46583f1adef5c9684 *inst/doc/IsoBayes.Rmd
38823d2f1091874cee70b224a40ec501 *inst/doc/IsoBayes.html
27e9f458c04c1e5a95a9abbe2ad50259 *inst/extdata/AllPeptides.psmtsv
9091f85ca7468f2f35206b5506d29242 *inst/extdata/AllQuantifiedPeptides.tsv
d47cdda3028950739e67431ebd37b97f *inst/extdata/IsoBayes.png
c6daeb8484b7fba0859a49db121768ec *inst/extdata/jurkat_isoform_kallisto.tsv
cad28470e95e85fd774a34895e76edb4 *inst/extdata/map_iso_gene.csv
ae2ad1967496613fc3879f94f630e390 *inst/script/extdata.Rmd
e9ddb233de4c72fc400b71dac7f3b508 *man/IsoBayes-package.Rd
8485058cb9becb9bf285a5e32be32272 *man/generate_SE.Rd
2fde974f2146e2dbe6c92796f1be6848 *man/inference.Rd
e4565ffa0c97c9c7955fb5aadf712825 *man/input_data.Rd
fb17485a55e1384d01b5eb0fb314311d *man/plot_relative_abundances.Rd
c62de90a3adce1ac515a4f5221cb9273 *man/plot_traceplot.Rd
d25907b27b66aab03ba0864429064414 *src/MCMC.cpp
8801e0dee6415126b32decfb723a1a1f *src/MCMC_PEP.cpp
5893b5b98f783dc94710f32181396b85 *src/MCMC_Unique.cpp
fb4b543f77464194c3fc1f05197ce1a2 *src/Makevars
fb4b543f77464194c3fc1f05197ce1a2 *src/Makevars.win
de03fd5196a21a07adb16076d481b9c3 *src/RcppExports.cpp
54ff0dd321cc48b5e474c45076f5ccff *tests/testthat.R
09a1451f7a89d718c3fbf2a7a5870fa6 *tests/testthat/test_generate_SE.R
b0b31fd94387a1b028751e12c87135ea *tests/testthat/test_inference.R
3f39523e09e46c029917f5426f86b081 *tests/testthat/test_load_data.R
6c7ea1d017e861de88f7892a361daa37 *tests/testthat/test_plot_relative_abundances.R
fc686563d7242bc46583f1adef5c9684 *vignettes/IsoBayes.Rmd
41ac80521463d4b8606ebad8f1bac0ce *vignettes/References.bib
