b9be4ede9e3ab3a50d78ec1c0b1e36e0 *DESCRIPTION
2960d2bd1a8ae0910f0a1fd9ced445fc *NAMESPACE
1c98d054e55aa7330387038a8a83c9ad *NEWS.md
83ad7876bec8ce2f9a8a6324871b6d21 *R/01_data_processing.R
e72295cdcba1c022ad39485ff2c56eec *R/02_de_analyses.R
e3d7fbf32550b2570b6ca843ae3a02ac *R/03_expression_partitioning.R
3979e88d754da200e7a63d68d0198bfd *R/04_gene_set_enrichment.R
df6cc46bc7fae1a55b713f3d5065b35a *R/HybridExpress-package.R
a3bdbcd8cceae9af6c960a77c0ffa059 *R/data.R
28f83f912a9280522d716a679ce968f7 *R/error_handling.R
a1d51cf0f34e363faf6a40d5c65a9fb9 *R/utils.R
fdac80398ef55881085bdd164e8376da *R/visualization.R
2f6910f2a68661201d738b0d6866a5ba *README.md
aaf66a30d5226f098fa15b86c5e14340 *build/vignette.rds
2dbcd48934631d0d7c6eb60cbc9d997d *data/datalist
d459e868ca583d9e28b2f5df74dd2954 *data/deg_counts.rda
12901cd34621307085af8fcd0685d31b *data/deg_list.rda
feb733df05a6fcca5c55b5fabdc244f4 *data/go_chlamy.rda
5de41f6e075967099aa6944829b8b439 *data/se_chlamy.rda
7ec8ac14fdd273636d5d3cf07123f5a5 *inst/_pkgdown.yml
0e6b46233a8fdb3ca2e321643fc15979 *inst/doc/HybridExpress.R
74f5f8365420ac54bed700217323fc98 *inst/doc/HybridExpress.Rmd
73d85ed4ed5792e175d0538e45504e31 *inst/doc/HybridExpress.html
4b6b3bcf91bc111f11306c29bb06f385 *inst/script/DATA_ACQUISITION.md
a299e2e42ecce7fbe617817bf739e40b *man/HybridExpress-package.Rd
ad4d07f88b8a7f395bd5b5705738b35b *man/add_midparent_expression.Rd
f4ecfaed38e97ff10ddcd6cf11c9672c *man/add_size_factors.Rd
90787246f3750eec7c0440ad665e3f35 *man/deg_counts.Rd
28948f28ed9e3bdb0a6eefab1a6f3a30 *man/deg_list.Rd
657d5928a5577a5d38441a5e2d568013 *man/expression_partitioning.Rd
0d10e322a21c9720be2de965e2f26fd6 *man/figures/logo.png
5582cb5f2ebf180e71945aeb3a19cacb *man/get_deg_counts.Rd
4682c2c86df5e046937478790866f51a *man/get_deg_list.Rd
d541865a795c04ff3eb70fff5d3b2afe *man/go_chlamy.Rd
9e3ac56590458f26add049fb30167c0c *man/ora.Rd
a04730ad491bf364d347434e0364d4d9 *man/pca_plot.Rd
8b43aa4611cc2cfdacc9013196481728 *man/plot_expression_partitions.Rd
3d34b51072b957203eabe5e76ed7a1bf *man/plot_expression_triangle.Rd
7293ad93433bb592045902c04dfb25a9 *man/plot_partition_frequencies.Rd
28608c547c7f89a77c8cc414f581ddbf *man/plot_samplecor.Rd
b80720277ea0a98911b1ca8c25e2dedf *man/se_chlamy.Rd
656a6564cf42f7095a40e31a2bd578cb *tests/testthat.R
8fe96681309ba778cf679f3f6307f85c *tests/testthat/test-data_processing.R
094b374935887f088b82288fc671dc2d *tests/testthat/test-de_analyses.R
8848c31d76be755e2f7af6b7c9dbdea8 *tests/testthat/test-gene_set_enrichment.R
0428919ab8eb1366cd32bf32fc74ff2d *tests/testthat/test-partitioning.R
f827627694c48a6fec0da1e4245c82da *tests/testthat/test-utils.R
8eba0db5b81c73b4172b483e97a164b7 *tests/testthat/test-visualization.R
74f5f8365420ac54bed700217323fc98 *vignettes/HybridExpress.Rmd
704c13ecb03c4943a2f2b6e6789ae41d *vignettes/vignette_bibliography.bib
