3bea36dc4d3df6f65f21fd74bb59cbe2 *DESCRIPTION
aa8d101fb78b820c280879bf767b2572 *LICENSE
44ff53612fd923ed55d96146476ed805 *NAMESPACE
a237f662598cb09a2c83381c76eee145 *NEWS.md
f307d31ca8e0116609e32f4f2e9a10e6 *R/Aggregation.R
d28ae6ba99fd0489bf9c6dcfb8d28eee *R/BalanceHiC.R
63f8ba07091a7eac859acaf37c532300 *R/BinGRanges.R
0182fcbf1787e20f7a6c207a662618c5 *R/CutHiC.R
1f47d8b7b92b7ba0b17ba1fa08cd6b5e *R/ExtractSubmatrix.R
4abe166d0539afc9bb0b0a4d62e15485 *R/FilterInteractions.R
2266286761eaf57924e7fe4f3772f8ee *R/GetInfo.R
51e9fd6c1b9748c194eae2d0448ced8a *R/GetQuantif.R
4e15405b343b782c4ea7111863fff6c4 *R/HicAggR-package.R
93c2b47b4d99b077e98d8e4772718d31 *R/ICEnorm.R
24c6fe3bf11f5cf7781f4f7697862ba9 *R/ImportHiC.R
97aeca2e06306bf3ec167e472e358d3c *R/IndexFeatures.R
728ad12c7f6e2ed2cadcf94d827a4cd6 *R/JoinHiC.R
505e4e0eae459a06f231b7aa7a57e914 *R/MergeGRanges.R
f8e2f2ec10967bf0e056873a5d7d4784 *R/OrientateMatrix.R
472774a7d90f3e97c1878627d137f0b6 *R/OverExpectedHiC.R
f60dd0cfa7097c224206df0e05c23e25 *R/PlotAPA.r
27350c52f3f23518aa166c8fff1eff9f *R/PrepareMtxList.R
b0694d3c8c4f1197bbfd2488f2d6be37 *R/SearchPairs.R
4f23a2ad4618442f1006cf5fb3d27647 *R/SwitchMatrix.R
814887fa52ee99e69ae9aa90c5e2b6c5 *R/VCnorm.R
21341b8f716dfe48d326f4ffa66cbc90 *R/compare_to_background.R
94dd20af994bf01d4d479df5c58f83b5 *R/ggAPA.R
674236df48ffd219cef1917a24257970 *R/importLoops.R
6b4ef70febe253e7801993b4e8ef1c90 *R/utilities.R
2e554225aa9fd943855061fa18e923e9 *R/zzz.R
88d033b66ee75d7ba51ae967d1988dad *README.md
4de930b57f63b54a2a04ea8f5eb078c0 *build/vignette.rds
9e3be13b9666c6cb0900f1c81f534ea7 *data/Beaf32_Peaks.gnr.RData
84a1e85b2620dba1935034c15eed805d *data/HiC_Ctrl.cmx_lst.RData
444b76d68c6ad66d992ebf20d127b861 *data/HiC_HS.cmx_lst.RData
69660fff38e81e6f1802d0cd2b1364a9 *data/TADs_Domains.gnr.RData
94406347a7318c25cf554228e70b19e6 *data/TSS_Peaks.gnr.RData
ba580fb17eea7d73e75c122477639744 *inst/doc/HicAggR.R
48171a931a0f61961e0bfe1d6e244543 *inst/doc/HicAggR.Rmd
e3ce3e669de257095eb6e8386f80f511 *inst/doc/HicAggR.html
e90fe94b4dec64206f71a25af3f09f90 *inst/extdata/Control_HIC_10k_2L.h5
98b157203404253a86c0d0352677798b *inst/extdata/postprocessed_pixels_5000.bedpe
921eca520df13daa3f5b283665ded2c9 *inst/scripts/create_axample_loops_bedpe.r
f730196e8ec2af02a80e60fedecc7483 *inst/scripts/create_example_h5_file.r
23764bc7f180540b52a02b7df4c79acc *man/Aggregation.Rd
4a5cd3bed5cc0e83ebbf15eca8f89719 *man/BalanceHiC.Rd
d61c899e42ffc3011e4f3e7f50d6a91e *man/Beaf32_Peaks.gnr.Rd
5ab87c72ba06906ca498118022bdcde3 *man/BinGRanges.Rd
ea3aeb07ba18de03585ed6982950a713 *man/CutHiC.Rd
90fbae1841d518b331e742408424c00b *man/ExtractSubmatrix.Rd
006a72107802075c66541a9c14d9a6e9 *man/FilterInteractions.Rd
fae7ee6bf70dc0959e21bf720b58edd8 *man/GenomicSystem.Rd
5f74b46dc99c7ca811095854d42c505f *man/GetInfo.Rd
fa8130b75f4d22b17e20a2d6fc2054d5 *man/GetQuantif.Rd
d3637d255a3e3c1baeb2ff95b4ddb1ae *man/HiC_Ctrl.cmx_lst.Rd
d847131d7ba091171496d42800f70a88 *man/HiC_HS.cmx_lst.Rd
d8cdc57a035ba682fdff415a853efac9 *man/HicAggR-package.Rd
65a9e1e2ba251cafcbe7e1d0341dfa63 *man/Hue.Rd
ae6dfa1e449fca57ff7bdd78744ac529 *man/ICEnorm.Rd
afa737c015534c3d29370a1b2de5a272 *man/ImportHiC.Rd
775000e846b25a01bc8246258ed1fcb9 *man/IndexFeatures.Rd
9d7ecf0f55dffe2bdd6f01ef1c2c58fe *man/JoinHiC.Rd
ff27a7a4956ca32a79619bbb2461a39c *man/MergeGRanges.Rd
9f54b46e8a3c976ab339c11333ed78ad *man/OrientateMatrix.Rd
356a62d1f8e382a8455f90544089eaac *man/OverExpectedHiC.Rd
bec49049d82ad65ce1a0ae7395258614 *man/PlotAPA.Rd
ec63a3e4b03292e80b332ca1cf5b5559 *man/PrepareMtxList.Rd
47c0f11ba35fa364de3fde6db69deb10 *man/QtlThreshold.Rd
27f83e7d9db3feae9a0621f77d3e7b13 *man/ReduceRun.Rd
79e373d213d5e895e54442a6194816fd *man/ResizeMatrix.Rd
f4354039c9e2a09dcb03bafc29eb36e3 *man/SearchPairs.Rd
54f8820623675b5551290fb816316f3f *man/SeqEnds.Rd
e0667e6e652f96ff02b334e813940aba *man/StrToGRanges.Rd
68e7a1a6377796d238c6987adf80f196 *man/SwitchMatrix.Rd
b7315dc9eee0312835ea0ccfbce6a475 *man/TADs_Domains.gnr.Rd
853f7f094f759a4859a56bc4fe0c748a *man/TSS_Peaks.gnr.Rd
314004b1cfaeb90a92bea98149578163 *man/TrimOutliers.Rd
44777e5cd24d00412c4dc1f0fa1690e1 *man/VCnorm.Rd
b870c5a2cd74ac351f7fb4505255a45b *man/WrapFunction.Rd
fb954e10922e431518e0ff669fff957e *man/YlGnBu.Rd
892d8209979312290831e006829b31f1 *man/YlOrRd.Rd
9604940071b2b751cbe4a83068e10c7a *man/compareToBackground.Rd
0e9393f6b1c4a2ef689f23bc84dc0274 *man/figures/logo.png
bf62a1d89297d14e9778eb77230cfd0a *man/figures/pkgPresentation.png
3c0e14496e7d4fcc5c58aa73951c2c73 *man/ggAPA.Rd
b55c83dfc2bccde535faa2fbc99ca5a2 *man/plotMultiAPA.Rd
49e03c87ac157e00d731b17042273a50 *man/preparePlotgardener.Rd
04f4ab097070738f1e9d717b7b5f6174 *man/viridis.Rd
640cef371c035505afc8358d2188a262 *tests/testthat.R
a065eadcf403a5199218b6731e7cf944 *tests/testthat/tests.R
48171a931a0f61961e0bfe1d6e244543 *vignettes/HicAggR.Rmd
817b7f6fa465d53cf57730cc1275ff45 *vignettes/images/Extractions_of_LRI.png
9ee797d9073bb5d1c68d7d16b5b12ee2 *vignettes/images/Extractions_of_Ponctuals_Interactions.png
6306983c15a6f879b416e760890a5b7f *vignettes/images/Extractions_of_Regions.png
50fd3278c57b0fc5352d4ab8480e1fd9 *vignettes/images/LRI_GInteractions.png
7c5a894064ff7f78ade4737b3d25c155 *vignettes/images/LRI_GRanges.png
3bdaf7be0a6bba884f5f2e523733f714 *vignettes/images/Orientation.png
10cf8b8309b1b4365b9dc8ea5a9834e6 *vignettes/images/Orientation_extraction.png
94bf72d2df45a9a206c8f710a3036434 *vignettes/images/Ponctuals_Interactions_GInteractions.png
c697d7544156ef33540e464357395cb3 *vignettes/images/Ponctuals_Interactions_GRanges.png
fc8e8e4168a8c8da89ce182a740ed88b *vignettes/images/Regions_GInteractions.png
121201705d63c063e6bbde81eb269253 *vignettes/images/Regions_GRanges.png
