c0aff0dde7a1f1ba453630968b3bbaab *DESCRIPTION
07c88692ce88af0dd308506193834202 *LICENSE
b51d38a6861431466d24c1e5c94a818e *NAMESPACE
291b25ae27d51d3804fc5f544617dd29 *NEWS
ad312051bb3d9e3f6bc8b30fd52619e5 *R/MCMC_chain.R
4a5952f891f72a6e3a050cbaefcf8d26 *R/RcppExports.R
a321df1eddfb14c550156840d8a5e6af *R/check_required_columns.R
1732d8f56c34a527ffa6751b7be6a675 *R/compute_probabilities.R
f480654b43a1561c8f64434c0cd043d7 *R/globals.R
e696938b4507563019dcf4d3e8b7d4ca *R/likelihood.R
5e014ec3b70e9c313db3919ec8beb713 *R/likelihood_potts.R
c69c66db67d66d992d3b3d32d903e1db *R/posterior.R
5cc1c8b6fcb6c48ffb3ce9d1d8129c48 *R/posterior_density.R
8aa53e0fee79dc4a62b3e2e69b216c67 *R/potts_posterior.R
ce3f6d13b3efddc53e499d09e2e4d696 *R/prepare_data.R
0b8ca0fbdc002ad204e2c25ec54582cd *R/prior_modelling.R
d45a9bf0ebdf5593deaf11ae08477e00 *R/prior_modelling_size_NB_ZINB.R
25b9f9cab6ea93bde428c8c96e95f007 *R/prior_potts.R
ff50f9986a4e2eada9cb5516f66990e6 *R/process_data.R
bcef55a5c82869b888aa26e716924199 *R/proposal_potts.R
0fe5e6787cad7af58767e39087cbcbf4 *R/run_chain.R
d37b7222807664588888ddf9979185e3 *R/sources_of_biases_model.R
35be396778a79812ff6d082d283b0504 *README.md
868091659b4ab47ef7e4c55e8b91c578 *build/vignette.rds
cc595367e8f7f5d18ab0f021cdebc318 *inst/doc/HiCPotts_vignette.R
9aff34828590f06335fbb1b718793edb *inst/doc/HiCPotts_vignette.Rmd
139d7332f46823801dc0a741004fa1df *inst/doc/HiCPotts_vignette.html
b14d49a78d1b5cb053564e4014d882ef *inst/extdata/BG3_WT_merged_hic_matrix_chr4_100Kb.cool
57c32a850bd959b46b4f83d03962d138 *inst/extdata/DNaseI_BG3_gr_chr4.bedGraph
0bd3f20c51ff156b1ba70c24af4ad403 *inst/extdata/dm3ToDm6_chr4_only.chain
c3364acd3f1d21dfaf89bb58e81b5725 *inst/extdata/dm6_TEs_chr4.gtf
e408855fd9d9c7a0c1ee6d84516d2c71 *inst/extdata/test_data2.csv
1b85cc85f991d2bb2aa61dad1ee1012d *inst/scripts
a732a085c4429fd046bf949265a9ba1b *man/Neighbours_combined.Rd
e1240298a2a3f8701096e9b3f27d903e *man/compute_HMRFHiC_probabilities.Rd
061886a7b9c06ee9c5ed287c04e7799c *man/gamma_prior_value.Rd
768cdc96913efdec5ecb18048bf182ef *man/get_data.Rd
d5eaf1df9ca4f9efe618d7c104dc4e71 *man/likelihood_combined.Rd
74da15ed5f2a6c9ff66173135883d529 *man/likelihood_gamma.Rd
c43b2ba302df5198125ec5ea8bb37edf *man/posterior_combined.Rd
a653847e9c89799dc7262305ae240c56 *man/pred_combined.Rd
8bb6e4629cb335c28d33374cc42d3b24 *man/prior_combined.Rd
40969ae6a1c15aaf03bc6594b1f56cfe *man/process_data.Rd
5c00544e8c94aa44527cf6944179c9b4 *man/proposaldensity_combined.Rd
710d9e3ad630496af22481c548dfddac *man/proposalfunction.Rd
c6fe167f4e61466bb46351fb76d5f9e9 *man/pz_123.Rd
9ad999023de48ff2408803ae4aa07f38 *man/run_chain_betas.Rd
dc2afef59ab719d30364a97e05fd99fa *man/run_metropolis_MCMC_betas.Rd
b4ebdbf3afa40274e168132988a4fb08 *man/size_prior.Rd
4d4ac1d72475cc2af0af76dd6baba8fc *src/MCMC_chain.cpp
301ab2446de107dba661633a148661bb *src/Makevars
0705a194727013c7c3500d4290a3ca08 *src/Neighbours_function.cpp
bcc9a58642f748bc911140a0cd2fc7bf *src/RcppExports.cpp
d3378c1f964f11ed5477d136b74a56c2 *src/potts_posterior.cpp
34acb29ea8e2d5737c8938922e5f31e0 *tests/testthat.R
9dab18155dcda454b4eb60639379311a *tests/testthat/test-RcppExports.R
f84028d18a9df7d813a24aa0f1eb5ab0 *tests/testthat/test-compute_probabilities.R
3742ebc5887a5ef42aef7f3fade5e652 *tests/testthat/test-likelihood.R
926cbdb933b0a6de654c41e5f3039e8b *tests/testthat/test-likelihood_potts.R
f00bd2e9a3afe4059884cfeacf17bc0b *tests/testthat/test-posterior.R
85871adae7e9e8ab2c656ef6f3f2df76 *tests/testthat/test-posterior_density.R
779963a3cc91375e4cf3390301c9cab4 *tests/testthat/test-prepare_data.R
0387490823231cc652d47e0a3b94ebec *tests/testthat/test-prior_modelling.R
5162f7987fa0a8d6048cea5d11a9484a *tests/testthat/test-prior_modelling_size_NB_ZINB.R
c23fc5dd429f13dee9ebdb502cc82c5d *tests/testthat/test-prior_potts.R
d712854d43fec5038a3c65905ce5f21a *tests/testthat/test-proposal_potts.R
57a59bb8b6223582d8d47faf8a0a7960 *tests/testthat/test-run_chain.R
924e4611255d01e30cfc69165b22372e *tests/testthat/test-sources_of_biases_model.R
9aff34828590f06335fbb1b718793edb *vignettes/HiCPotts_vignette.Rmd
