35d38d110d8344279cdaaf7b5af23575 *DESCRIPTION
6749c3fdb2a3eb4e977523f1cefd300e *NAMESPACE
63831d77276d8cc59a29dbf485ba1982 *R/HTClist2gi_list.R
fb7f5fe932bc0c09cbe1ecac21bb290b *R/HiCDCPlus.R
d4611709a22da6bbf31a3e41ffb6c646 *R/HiCDCPlus_chr.R
62994f372b82a1d942c4727832234535 *R/HiCDCPlus_parallel.R
adcd8cc691cecbc68992e4a40fa295a5 *R/RcppExports.R
cb1a337518827a52eef52b9735ced231 *R/add_1D_features.R
4a1f19005de4a070f784966ca9efafa4 *R/add_2D_features.R
461aaa403e6a1db6fdebb897dbcb005e *R/add_hic_counts.R
25b157683b561b1e85f9c6a72a3183f8 *R/add_hicpro_allvalidpairs_counts.R
2c398f9fb39ce24bd4d9805d610de450 *R/add_hicpro_matrix_counts.R
34a3fd280bb133a5d027b3eb29994a1c *R/construct_features.R
978e36ea73ce71e957cd18109c8b0d11 *R/construct_features_chr.R
4af2a025e19c007d0d5736c015787475 *R/construct_features_parallel.R
cfb329b7f240db870f5151c2c9927571 *R/expand_1D_features.R
76ecb19c372e530e4c8d6a7b2d2a39c8 *R/extract_hic_eigenvectors.R
ec43514c34d71bae5eddd62abef9f717 *R/generate_binned_gi_list.R
fcb17ebe20ae8b771e2831479538413a *R/generate_bintolen_gi_list.R
30a557a085313eb844cf315b145f536d *R/generate_df_gi_list.R
e75625a76f8cae06fe3e6ef36b9a7142 *R/get_chr_sizes.R
819e4ce338880caed209c4d5d70917bd *R/get_chrs.R
a6441e8f5453d39fd930a1da4af74f5c *R/get_enzyme_cutsites.R
cc73c76af917bbdbc94be1a3f2cffa01 *R/gi_list2HTClist.R
1071a9fc642bc085fcddbf6d40f81b8a *R/gi_list_Dthreshold_detect.R
8618d6962fc8098f35d16755367b8587 *R/gi_list_binsize_detect.R
cd2f73659f6886cc5312f87a17928263 *R/gi_list_read.R
458e3e2275efac3a38f8220c14fb4bdb *R/gi_list_topdom.R
5d2ed278a46aca2af9c5cdb3c917e428 *R/gi_list_validate.R
707274c853ab8b9b21df9699e7215b3d *R/gi_list_write.R
1eb893f8703dbd394b6405f0abe60aeb *R/hic2icenorm_gi_list.R
24ebdf9b2d4d951720c11b6b9624d3f6 *R/hicdc2hic.R
2b492255cf62ab2e3bcf75a8ebcb6d38 *R/hicdcdiff.R
733f67c58ed6995e57a3071932c38ebf *R/straw_dump.R
48961000f38faf259a692566a5317a23 *R/utils.R
dc17beb1e7d3092d93eabe73aafa2a77 *README.md
4bb9fa82122434c3e0038e381975c8ca *build/vignette.rds
621d9a3077bcb35205f83e71fed45cd7 *inst/CITATION
cd470b8d46e5e478c4a3deff52069b1d *inst/NEWS
f861e6a935aa44328b78026446986fcc *inst/doc/HiCDCPlus.R
01f2e42492ab1c6f5036d5afff5a0d39 *inst/doc/HiCDCPlus.Rmd
c7f644ac3aba60b5e0925b21d57e5be8 *inst/doc/HiCDCPlus.html
1ee25e34a92c1276df07a41913899e4c *inst/extdata/GSE131651_NSD2_HIGH_arima_example.hic
cb0220a5ddc0b3d999ba8dce2ed51e9e *inst/extdata/GSE131651_NSD2_LOW_arima_example.hic
1ee25e34a92c1276df07a41913899e4c *inst/extdata/GSE131651_NTKOCTCF_new_example.hic
1ee25e34a92c1276df07a41913899e4c *inst/extdata/GSE131651_TKOCTCF_new_example.hic
6143ecba27f672b4885f54f27bd52f6c *inst/extdata/GSE131651_analysis_indices.txt.gz
cb0220a5ddc0b3d999ba8dce2ed51e9e *inst/extdata/GSE63525_HMEC_combined_example.hic
61074bc34ccb96130f8a981f476df7dc *inst/extdata/eigenvector_example.hic
2d0820058d00181a8e48f099904a8e45 *inst/extdata/test_bintolen.txt.gz
e964647556f6aec8fb5c39f4cb8c40fa *inst/script/extdata_info.txt
5d41b6fb46caa3f22b6b0204a2ccdc3d *inst/unitTests/test_functions.R
485b9caf099020b51ba6e3ac9c4832d1 *man/HTClist2gi_list.Rd
7deb47a8b6c3baa7ff4a419d91d29067 *man/HiCDCPlus.Rd
8082be430fa7d65dc79601c3588b3c9a *man/HiCDCPlus_chr.Rd
1cf2aabc14ab6120596be99531621396 *man/HiCDCPlus_parallel.Rd
095621d162206cf8eedada294f695adf *man/add_1D_features.Rd
65439fc2d8a73ba80d7b07c34c2773b6 *man/add_2D_features.Rd
9d1ff7f520352cd0a65acb3b3230df20 *man/add_hic_counts.Rd
67c5915bca22b92a248368dd08ecdc4a *man/add_hicpro_allvalidpairs_counts.Rd
186d4165d89e32df4449cfe1d682a7da *man/add_hicpro_matrix_counts.Rd
7324ef0aa2f43e6d666c815dc7f47197 *man/construct_features.Rd
073d7aab55c782fe74e144f28300552f *man/construct_features_chr.Rd
ed69bb7637dda5453e4d2c0f39a3371b *man/construct_features_parallel.Rd
dc46f41ea11e4e0e4f5d8e5e8fdf739e *man/expand_1D_features.Rd
4ff6142e949b32feee094234d449f66d *man/extract_hic_eigenvectors.Rd
f8c64a2ae889b5a009f5aefe976f4915 *man/figures/manual.pdf
aa68060336aaeb7d04f967f84d66c996 *man/generate_binned_gi_list.Rd
4b6beecd48ba3cfdbc4f940b266c6d06 *man/generate_bintolen_gi_list.Rd
9cbdd554561ed7cd9f14c8448469e630 *man/generate_df_gi_list.Rd
64528915f4709e90207673e3554659b6 *man/get_chr_sizes.Rd
2b18569b4b59e05075134d1fe0dcb7f3 *man/get_chrs.Rd
721a529d446aa5d78033401dd5659fff *man/get_enzyme_cutsites.Rd
38cd9980e7099d565eea7a84ef1485da *man/gi_list2HTClist.Rd
88bb919bc39eb43ba3029c64fcf7fad3 *man/gi_list_Dthreshold.detect.Rd
bb7f10b803a502edfd24d34d71e1fff5 *man/gi_list_binsize_detect.Rd
22f7b8ab07e4435a6ac6b46f74e511e7 *man/gi_list_read.Rd
8b37022548a97824f08384fc4346033a *man/gi_list_topdom.Rd
bea69ee74158e6faa15db2745711bc7b *man/gi_list_validate.Rd
4719f3964a10e1fde99e4f13bf03c002 *man/gi_list_write.Rd
3ad1e938d970c8f84d880383ca20acd4 *man/hic2icenorm_gi_list.Rd
39666d7a49980ed0cce674d60484840f *man/hicdc2hic.Rd
7ae13bd144099bae5f45bd89da3f1355 *man/hicdcdiff.Rd
9b832e214f3dcaafb13eda08ddf81a5f *man/straw.Rd
cc6eb2a7d37fc17c8d8c12e7d9375283 *man/straw_dump.Rd
6c0a5ce661f9d2f04852a2e7bf0a649b *src/Makevars
6c0a5ce661f9d2f04852a2e7bf0a649b *src/Makevars.win
a6aed01aa690e1f5717a13acedcb78d6 *src/RcppExports.cpp
794753e152f20cf80ae6ace71f6d80e6 *src/straw.cpp
d46f38f70d69aefd088ca8a10e9059a0 *tests/runTests.R
01f2e42492ab1c6f5036d5afff5a0d39 *vignettes/HiCDCPlus.Rmd
