de97c1b53fb988d8a28c29efc699119b *DESCRIPTION
3081ec3d545205242613d94e8ce5189b *NAMESPACE
9d9b4c2da664db87f4b6b4f2ca679e99 *NEWS
aa3f5c9d12c7a74fb02ed0473cc8b8d1 *R/Association.R
3e6bafce68574055ce316994e96b1428 *R/DataUtilities.R
eff79d96c2ab333d1ba8bf2b3bfcfeff *R/HIBAG.R
bd20f1c4988776ca7e835cf1e31e3bbe *R/SeqFormat.R
a2b0e9d5ecba43dc68deb3855ab929cc *README.md
be8a7b65080afc4c56abec577cee2a5f *build/vignette.rds
0aa5efb89b720bc59a5b970682cd6667 *data/HLA_Type_Table.rdata
cdf022684a29b65d99fadd716101ada7 *data/HapMap_CEU_Geno.rdata
070c6cce18934141ba79a30b944d3b4b *inst/CITATION
0587353a3e4e6830134ecfefb2a3d7fa *inst/GPLv3
541fada72d24613cd19e78d1e61088ab *inst/doc/GeneInfo_hg18.txt
4f81c24c0698f489eb37a3458978af5e *inst/doc/GeneInfo_hg19.txt
f38eff6705df7f74753cecd6b0a70f6b *inst/doc/GeneInfo_hg38.txt
e1807a9781233618e05db0ca6708386e *inst/doc/HIBAG.R
b4ee4634e349ea4ff92b41d606dd392d *inst/doc/HIBAG.Rmd
a8df691a35013a1fb89b5138196032db *inst/doc/HIBAG.html
029fad98fba9098da17b6f2692a3cdaa *inst/doc/HIBAG_LICENSE.txt
1eafaf7f3ba8b51cf9d38bdc99624dba *inst/doc/HLA_Association.R
ef4787d69f71792e109184262bbc7f17 *inst/doc/HLA_Association.Rmd
93a4e95b6fbbe6b8952c85dcdef3f37e *inst/doc/HLA_Association.html
1da58602a3e5dec0411e670113ab7d9d *inst/doc/Implementation.R
3b881bb1e55be0aec6aaeed3223fc027 *inst/doc/Implementation.Rmd
e128289dbf431b6b2357417b71aa13dc *inst/doc/Implementation.html
ccf32b700be4733ee9ca0affe6547603 *inst/doc/case_control.txt
10721a93bca3a9ab6627f1b370fd6cb9 *inst/extdata/HapMap_CEU.bed
3913ee17a6daf816d6c1b102c3e96075 *inst/extdata/HapMap_CEU.bim
9f19a72758e7aa818b19eb7331f9ed89 *inst/extdata/HapMap_CEU.fam
d10eaf617ff4143acedea87fd7c94c18 *inst/extdata/HapMap_CEU_Chr6.gds
604fa0e2ccaa1424b89013b60857e982 *inst/extdata/ModelList.RData
c47432f1b61233f4e386c05e9f8d9f11 *inst/extdata/OutOfBag.RData
7122b79c2a17794cbd7545b45071bd6a *inst/extdata/case_control.txt.xz
209c166b2daae9fd0bea25995992c78d *inst/extdata/v3.22.0/FeatureInfo.txt
c5986f745aa7cba1f58f1b4cc05a18a2 *inst/extdata/v3.22.0/Licence.txt
e681abef973a360a6fdbdf760d7552ac *inst/extdata/v3.22.0/SeqAlign/a_prot.txt.xz
9789f387e98c887babe56f4bb8a12356 *inst/extdata/v3.22.0/SeqAlign/b_prot.txt.xz
e8ee532f94ea08592f69896c77667a0f *inst/extdata/v3.22.0/SeqAlign/c_prot.txt.xz
bd303d2d546a6711766fa43dd265c827 *inst/extdata/v3.22.0/SeqAlign/dpa1_prot.txt.xz
0d214530b87163ee618a815166d22482 *inst/extdata/v3.22.0/SeqAlign/dpb1_prot.txt.xz
adc60cc9238d0dd3a8d03d5dadcb38b4 *inst/extdata/v3.22.0/SeqAlign/dqa1_prot.txt.xz
e5d582950995ae37fb15f9c6194ca2c9 *inst/extdata/v3.22.0/SeqAlign/dqb1_prot.txt.xz
d636fe42ab3959346d76cf6347f93fa6 *inst/extdata/v3.22.0/SeqAlign/drb1_prot.txt.xz
db44c32768d81c00ebf8a9c6f47221a9 *inst/extdata/v3.22.0/hla_nom_g.txt.xz
1a63d3625c3800b8e811faff236a9da6 *inst/extdata/v3.22.0/hla_nom_p.txt.xz
90be6754524af3d3a7591b422c73fd45 *inst/include/LibHLA_ext.h
6969aecf1df704935d8edb3f26e6cfa5 *man/HIBAG-package.Rd
b2b0527ef8a37dc14cafa78c60259d2e *man/HLA_Type_Table.Rd
f5cd8ea0d83c82591825ef631b6aa4ca *man/HapMap_CEU_Geno.Rd
98a6718f0ed733f95ba82b04dfac9d0b *man/hlaAASeqClass.Rd
1e2a17df728e61c226c0e835391a041c *man/hlaAllele.Rd
6420900b15630a8216c89ce09d36fc9a *man/hlaAlleleClass.Rd
8920511253fdb740f08993d7b8d71f1a *man/hlaAlleleDigit.Rd
a8acffe6064ffb478c4c2c071a3cd097 *man/hlaAlleleSubset.Rd
bfd8fe83d71c5d213f89d7d6e7d9fce6 *man/hlaAlleleToVCF.Rd
7fb2baae742e5eb864006233d04397ab *man/hlaAssocTest.Rd
b30038d85e0442a844402607c4da47eb *man/hlaAttrBagClass.Rd
0525a4c20b6164cad520cbc07303a722 *man/hlaAttrBagObj.Rd
bfb4c995649e261db924203d58f97439 *man/hlaAttrBagging.Rd
a6791be0678b20d38fe8754947cea891 *man/hlaBED2Geno.Rd
9bc838c60e0d5380344286d27fe89a22 *man/hlaCheckAllele.Rd
0c89a48f1b22b91bcef0e0c0f6364e99 *man/hlaCheckSNPs.Rd
21fa0627be411096a36ec93c9c6e304b *man/hlaClose.Rd
6ad2f6f62f740ae618280555f2b9dfc2 *man/hlaCombineAllele.Rd
8040427c8152c357b29ee926a3cf633e *man/hlaCombineModelObj.Rd
d82d4c43ad578ac283f31983eea547fe *man/hlaCompareAllele.Rd
cf55a50616a82167cb9f5ce56899dc81 *man/hlaConvSequence.Rd
916ef85df53ca81b13192b770b780320 *man/hlaDistance.Rd
854927f17c32caa09d9fa2193e708179 *man/hlaFlankingSNP.Rd
c502b26d6bd7e73f566686861b15ef69 *man/hlaGDS2Geno.Rd
34d60d2d70a2fb2decffe40fd2dca6fc *man/hlaGeno2PED.Rd
f1109de04881b2a48551be76ea5fbd55 *man/hlaGenoAFreq.Rd
502bcbf566c1f35a07d6b7595752ef43 *man/hlaGenoCombine.Rd
398bfc73158bcf853bae606768b1a0bf *man/hlaGenoLD.Rd
14cc3e232ed2014702cf5e8d6c576a96 *man/hlaGenoMFreq.Rd
b688ea4e471408a87d911c99e0c9a179 *man/hlaGenoMRate.Rd
c1c2d539af51c6a9ee64fe98ec2e4281 *man/hlaGenoMRate_Samp.Rd
5b2e92858885191336489c1a51766f65 *man/hlaGenoSubset.Rd
6fb8444b384189e1c8d1df6677b8be2d *man/hlaGenoSwitchStrand.Rd
cd851cf7c3a157d35105e54502474bf9 *man/hlaLDMatrix.Rd
0c6ccc39c8657bfec1c9f92944b3e40a *man/hlaLociInfo.Rd
07b2dc31f2b74792644e165b109c3da2 *man/hlaMakeSNPGeno.Rd
55b691d484daa489abfc7613ec8b1077 *man/hlaModelFiles.Rd
a66124eb6bf85026bfbf8423f495e563 *man/hlaModelFromObj.Rd
320e8b837dfaeff27638fc0a08e91469 *man/hlaOutOfBag.Rd
dbe8b8c96af69215c2f3ae0c0618576f *man/hlaParallelAttrBagging.Rd
99cc075eca9f393ca04bc46485ac8a4e *man/hlaPredMerge.Rd
7a04a8fddf7fac821b0165f03c591f48 *man/hlaPredict.Rd
bdb8f6f44a57468052ee4a2723f5b287 *man/hlaPublish.Rd
b4c3bb5a0229d9363e96112f46e4861a *man/hlaReport.Rd
d78a607100e8038e6d2252bd83841efa *man/hlaReportPlot.Rd
c502c15e8af66fd1d31cceccf5b16c3d *man/hlaSNPGenoClass.Rd
e427f35dea6f5556b61153e997ccc0a4 *man/hlaSNPID.Rd
4d3f19e95fc5f5678b505aa564f3cf38 *man/hlaSampleAllele.Rd
ff48453068d230bc36de0dd8e2321570 *man/hlaSetKernelTarget.Rd
c9500afed0e3159a7817236d57fb1a07 *man/hlaSplitAllele.Rd
e6173c7da95019cca8996929a152d6e3 *man/hlaSubModelObj.Rd
a7df0201e87e1ed5c3c0038486a99d04 *man/hlaUniqueAllele.Rd
daea8b5d8469ff48ca9fcfbdade60547 *man/plot.hlaAttrBagObj.Rd
1521e1998aa5e625e67a80bb788ba639 *man/print.hlaAttrBagClass.Rd
51d3e556473f9a7cc658e469becd64fd *man/summary.hlaAlleleClass.Rd
2763d638fea30ecbe4c0301e45e1c4f6 *man/summary.hlaSNPGenoClass.Rd
07f25902cb7bbbace99072f9a3b76d7c *src/HIBAG.cpp
04dc8b1ccd26d1b0d6cfd4979a109a7b *src/LibHLA.cpp
f10e0e6b6a3c63cc109f57f7639e18f0 *src/LibHLA.h
f19c0145e9066ea5a3bc932ea78bc047 *src/LibHLA_ext_avx.cpp
667c25784e07b30681239b8d8a326439 *src/LibHLA_ext_avx2.cpp
8e24d44c70016fcec946db1e309a4fda *src/LibHLA_ext_avx512bw.cpp
3a7c248b95907d1ff02866f1f6a8b427 *src/LibHLA_ext_avx512f.cpp
10e130b5e7d26ae4486e23dbaddfaa0e *src/LibHLA_ext_avx512vpopcnt.cpp
082401de9b33c4dec71d17586e23789d *src/LibHLA_ext_sse2.cpp
b56f831eea08d41a741637d12d8cedc3 *src/LibHLA_ext_sse4_2.cpp
696044fa450f74feeac0136b9a5420e2 *src/Makevars
9a763dd94be8fd316829e8eb101ab2e9 *src/Makevars.win
bacdef0d8e9ca5ce87463ad1704464a2 *src/samtools_ext.c
80da6b2e1de6e95dbaa01ae0f9ece3c4 *tests/runTests.R
b4ee4634e349ea4ff92b41d606dd392d *vignettes/HIBAG.Rmd
398962c78707dec768c9de961e107c79 *vignettes/HIBAG_Ref.bib
ef4787d69f71792e109184262bbc7f17 *vignettes/HLA_Association.Rmd
3b881bb1e55be0aec6aaeed3223fc027 *vignettes/Implementation.Rmd
