12e14b1d78ca0e423b15248e33bdd972 *DESCRIPTION
4dd8a463074d349654ff406b77b1e879 *NAMESPACE
3188a545e101a0f690cafb0ba2187c39 *NEWS
dbe927b2900f7e533cb3b3321b6db568 *R/AlignmentsTrack-class.R
76edee92a33315296a3f7a53711126e6 *R/AnnotationTrack-class.R
5cb13cd8437d927b4021a5c205c3e436 *R/BiomartGeneRegionTrack-class.R
4d460aa14e0a5a40127e9932bd41d3fd *R/CustomTrack-class.R
f174b2c1d4986a1593cc559b9f7af135 *R/DataTrack-class.R
a9e5ca680a4c5ef583d2af9fa7b74beb *R/DisplayPars-class.R
bd4ffa8aa46d7d64066cfd915b89f28e *R/GdObject-class.R
2997de01ca4e2cc2a0cca3d4915edbb3 *R/GeneRegionTrack-class.R
ca41a3afe0198cc09ad5787f76ac59d4 *R/GenomeAxisTrack-class.R
6ee6a4b9354a9310c4204c04186d45ae *R/Gviz-defunct.R
a924e6a936122eb5460774bae4af0e67 *R/Gviz-deprecated.R
d1035d04e96da55cd8c8bbceebebffbd *R/HighlightTrack-class.R
26bc4d6798b7cb6955ce634abe3b913f *R/IdeogramTrack-class.R
d966f3ab338ce6f6cd435ada32b3b491 *R/ImageMap-class.R
5da06a680ff8f33d5ed123797d1670e0 *R/NumericTrack-class.R
c51b68716d294190f5054831d74476ef *R/OverlayTrack-class.R
a6840437db389795c0de794252f9eaca *R/RangeTrack-class.R
6b0f482368778a9b496d94274a6283a7 *R/ReferenceTrack-class.R
2b27c2571b1e64b9bee0fd72bc4a7aee *R/SequenceTrack-class.R
cef4eba5dfd38be37cafe73b0d43b8ab *R/StackedTrack-class.R
aa18d2ba4860b3c41835e189d30fd5e2 *R/UcscTrack.R
98cb7595e8de527f742fa6e12d5df6a4 *R/collapsing.R
44a41b762f2026f35ec8984913b04526 *R/datasets.R
fa0e4c0002038c71298523e06b525459 *R/exportTracks.R
378b55ac5736820bd8cf20865abb587f *R/grouping.R
ccc1c676304e6e4d264b701c5b2ef396 *R/plotTracks.R
d4a7573460c2c731fab731ca6c0a028b *R/settings.R
5b5582ded4128a2d047a28cd7f16f730 *R/utils.R
27ca1633a51ecde8f256d28e1161fdfe *README.md
a224ce78e3b2674fab5cadb51fe9d14f *TODO
bc073ae9dfcb397a3dd1e0b26906b742 *build/vignette.rds
29c3759ce1ca3a6f48538966e9aecdc7 *data/alTrackGenes.rda
adbbe96f28ca257dc504d1faa3e22365 *data/biomTrack.rda
a4ffb726114d485c5bcc07b1ef8f2fbe *data/biomTrack2.rda
8e7568e829fcdeed963b78aa7d316735 *data/bmTrack.rda
69138f8b96752ae33d54dd3d2c84be7e *data/collapseTrack.rda
ec14f653e370954cc34ce0655feba138 *data/cpgIslands.rda
83e74741356993fc71ad3c98b78cb555 *data/cyp2b10.rda
13096a3836f94371e9d8bc6e0718a084 *data/denseAnnTrack.rda
be1c7c276318a4849aa566040b99c147 *data/dtHoriz.rda
8b44e9b0b3adbf59e949da568569189e *data/geneDetails.rda
187a5085a77c6b14882df558d87579c1 *data/geneModels.rda
95d0c21edef0aae33e350c75a920207f *data/idTrack.rda
67a8c576dac03672ef4a458ba0832c5b *data/ideoTrack.rda
3e2c4d1741c4c22503de72c79276e0e4 *data/itrack.rda
9451ed6c7195833804581b6cb4faa5ce *data/twoGroups.rda
e936b7c953ed4ef84adabce2138b7a53 *data/ucscItems.rda
a9a318f460969f6fd8ae43d2e194a617 *inst/CITATION
0c247a3cf4334b1a193be56defad7084 *inst/doc/Gviz.R
d53306156c71252bd03178fd936b6741 *inst/doc/Gviz.Rmd
a82f05abd9f5b45b8cb429c63c6c9955 *inst/doc/Gviz.html
ddf88672b84a7d1cfcf96c6ecbfa31dc *inst/extdata/GSM461176_S2_DRSC_Untreated_1_bmm.bam
97a03f136fa9758fb95452c3468bbae5 *inst/extdata/GSM461176_S2_DRSC_Untreated_1_bmm.bam.bai
d3109d9f81b5870e33756b655a16ecab *inst/extdata/GSM461179_S2_DRSC_CG8144_RNAi_1_bmm.bam
abebe4d8c3734ba0da48bfce8214c6a0 *inst/extdata/GSM461179_S2_DRSC_CG8144_RNAi_1_bmm.bam.bai
a34ad75ab4203ea682f0be0c2eb230d3 *inst/extdata/biomartVersionsLatest.txt
c93b29885802c2088e5b637a4fe6acb6 *inst/extdata/biomartVersionsNow.txt
6209c285323d9a4c84f670503d9bbef5 *inst/extdata/gapped.bam
e51979572c974f47212698ee7e4ef85d *inst/extdata/gapped.bam.bai
48794fc8e52d53615aa0de077e06cd6e *inst/extdata/indels.bam
0d5cd62b4e6df1886ef14cc4b87ebf6a *inst/extdata/indels.bam.bai
401d6ad8e26a3845eb62531a1d47c4ac *inst/extdata/snps.bam
81e467b1b8c1dee1a7b379dc07703731 *inst/extdata/snps.bam.bai
bbcf3c01f9527b3782c09fd173b0f923 *inst/extdata/test.2bit
b9a047a06e861ce19de3019d29c825ca *inst/extdata/test.bam
45e4d0b0f9d86280c07d43a6982a0dd8 *inst/extdata/test.bam.bai
99690bbdac5a0305f40752495671166f *inst/extdata/test.bed
dcc1eb7a40bc298211cbc67479ef5686 *inst/extdata/test.bedGraph
66cc32bc64f7d67d05961b69d9252aa2 *inst/extdata/test.bw
b5250be1d7cdc5a5fdd57774368a83be *inst/extdata/test.fa
f0612083fbef725e93490cb697120ec3 *inst/extdata/test.fa.fai
cd434ff74b614e578ab0a292132c5afd *inst/extdata/test.gff
cd434ff74b614e578ab0a292132c5afd *inst/extdata/test.gff1
d2fb30677c94f0c8638bb31392dbb418 *inst/extdata/test.gff2
26d5df9a9915e6189def7b2df220b41a *inst/extdata/test.gff3
e60c7b57531c5ac8d7ccf27565f9030d *inst/extdata/test.gtf
77431782b1b5fc8e0c6ab8c39469c370 *inst/extdata/test.wig
981ffb906b839edf97ef23835f9ef0b0 *inst/scripts/documentation.R
4f82bf7d0bb565caffde65a7d00bf5d7 *inst/scripts/testBiomartGenomeMappings.R
76c2ee383715c0173b03161225539b2c *inst/scripts/updateBiomartGenomeMappings.R
860605a92198a5ae3a3be7d3551b189f *man/AlignmentsTrack-class.Rd
a2a3c2dc935a661b7dcbb1789346f4ec *man/AnnotationTrack-class.Rd
563d3ee8970e9f42c3ea502db94a8c0e *man/BiomartGeneRegionTrack-class.Rd
8d960149b5e857b0976dbccd32fc3062 *man/CustomTrack-class.Rd
733e29f64ae0d4575626d1c74365e774 *man/DataTrack-class.Rd
816216c1b64d51e79602a8a2fd56b65f *man/DisplayPars-class.Rd
26465904deacde980ab8635ccd34fd13 *man/GdObject-class.Rd
edf76956eb847a67b927afa81051837a *man/GeneRegionTrack-class.Rd
d8c3a7b5c951972a00217dd116f25596 *man/GenomeAxisTrack-class.Rd
d42c5c1aa428e79a6755fa0c7205f46c *man/Gviz-defunct.Rd
9c47356959b4f9770b3005263cafe418 *man/Gviz-deprecated.Rd
e3e3adfe2b2ba4d167dd85cacb2e2b0f *man/HighlightTrack-class.Rd
ca48b30d46c19e9142a56b726e8548cc *man/IdeogramTrack-class.Rd
f8591cbc4b2762cdc41d392b8364922d *man/ImageMap-class.Rd
2911d5bc1e14ff24b10d0c273fc22f1b *man/NumericTrack-class.Rd
db8cb3362162e08e5515f74c24589ce5 *man/OverlayTrack-class.Rd
8fd65b22a1ce698373ff9120c9b60a1e *man/RangeTrack-class.Rd
bc94c58cdc2853899a5b329dbd920a8d *man/ReferenceTrack-class.Rd
58c51d2610afdb53153d908e29a7a286 *man/SequenceTrack-class.Rd
90e678e55ca2477efb7d2ec4abc4e27f *man/StackedTrack-class.Rd
91f04cedf57679beb14b60695eb233e7 *man/UcscTrack.Rd
cf86e4a9c32a842fe957a389ce6ca60c *man/collapsing.Rd
51ff7f97a214abea016a7d19944155d3 *man/datasets.Rd
e47ca74db57bc48c106a1126b4637bd9 *man/exportTracks.Rd
234c8c4a499aa411e5ae2da85677e3f2 *man/grouping.Rd
0d91f7287fba7a5717712a857fb575e5 *man/plotTracks.Rd
2d60eb05778f4a5e3daf8e7b16617b2c *man/settings.Rd
9b63441d73cc044dd2f58dcd582152df *tests/testthat.R
342c0fe1155db686614b81cdb6aa863c *tests/testthat/setup.R
d28b550ad9387683bab7884dbd652180 *tests/testthat/teardown.R
62f199cbbae8067dcdce9c5e874d2a39 *tests/testthat/test_AllClasses.R
1671a5727c6b05c7ee6dbafb38349d2e *tests/testthat/test_AllGenerics.R
9dc1b2af4db348eb9cf1171b8b7ca74e *tests/testthat/test_Gviz-methods.R
b67e5dab3022d845bc3d102c9f523cb2 *tests/testthat/test_Gviz.R
a3e990e2f9ab5557e140cb9b91b9e77b *vignettes/Gviz-example.png
85d0fd28d691567fe775eed87a060edb *vignettes/Gviz-logo.png
d0cc656090a4db35bc2578c0da3033e4 *vignettes/Gviz-refs.bib
d53306156c71252bd03178fd936b6741 *vignettes/Gviz.Rmd
e033e366b96f7a6c67955dc758a54396 *vignettes/ucsc1.png
4bc3e46febb405c26a9b09351f4a8539 *vignettes/ucsc2.png
