Package: GenomicInteractionNodes
Type: Package
Version: 1.14.0
Title: A R/Bioconductor package to detect the interaction nodes from
        HiC/HiChIP/HiCAR data
Authors@R: c(person(given="Jianhong", family="Ou", email="jou@morgridge.org", 
        role=c("aut", "cre"), comment=c(ORCID="0000-0002-8652-2488")),
        person(given="Yarui", family="Diao", role="fnd"))
Description: The GenomicInteractionNodes package can import interactions from
        bedpe file and define the interaction nodes, the genomic interaction
        sites with multiple interaction loops.
        The interaction nodes is a binding platform regulates one or multiple
        genes. The detected interaction nodes will be annotated for downstream
        validation.
License: file LICENSE
Depends: R (>= 4.2.0), stats
Imports: AnnotationDbi, graph, GO.db, GenomicRanges, GenomicFeatures,
        Seqinfo, methods, IRanges, RBGL, S4Vectors
Suggests: RUnit, BiocStyle, knitr, rmarkdown, rtracklayer, testthat,
        TxDb.Hsapiens.UCSC.hg19.knownGene, org.Hs.eg.db
URL: https://github.com/jianhong/GenomicInteractionNodes
BugReports: https://github.com/jianhong/GenomicInteractionNodes/issues
biocViews: HiC, Sequencing, Software
VignetteBuilder: knitr
RoxygenNote: 7.3.2
Encoding: UTF-8
git_url: https://git.bioconductor.org/packages/GenomicInteractionNodes
git_branch: RELEASE_3_22
git_last_commit: d3ee518
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.22
Date/Publication: 2025-10-29
NeedsCompilation: no
Packaged: 2025-10-30 04:09:49 UTC; biocbuild
Author: Jianhong Ou [aut, cre] (ORCID: <https://orcid.org/0000-0002-8652-2488>),
  Yarui Diao [fnd]
Maintainer: Jianhong Ou <jou@morgridge.org>
