3e0ed7cc9cbc3297af449ae527f631b0 *DESCRIPTION
5fac02e2f73a68a9cafcf4a82a0b1e06 *NAMESPACE
018e38b5926af83a13453e27a0957f6b *NEWS
064f0ec6f3fa2b12a0b064a3c56e27db *R/AllClasses.R
817360798ad5ef1a0563842c2bef4d56 *R/AllGenerics.R
2bb451095e2dc521ff1f87bb093b7a6a *R/GSVA-package.R
59574ae6e07d16e21f7b02a200a68ac6 *R/GSVA-pkg-defunct.R
18db387789f75bbdcd66672324a13416 *R/GSVA-pkg-deprecated.R
354e1148562753ded0e072f35b848b21 *R/GsvaMethodParam.R
7012d4d72e07149ee5d72c4ccfc63083 *R/genesets.R
6176264f82cb9446dada6cfb04e58e0d *R/gsva-global.R
d4c620624866477f51e531dea4bdee33 *R/gsva.R
4d3f4c23f6727e9e16e9676b60f9df8a *R/gsvaNewAPI.R
c39d50b2f800dffa6f0914d9e7fc0aec *R/gsvaParam.R
b9dc820b43f9202894fb997cad429d32 *R/methods-ShinyApp.R
4fabb5315883af3f47f6dacd7087590b *R/plage.R
89568cda58e6bc374a828d3a0dbe5afe *R/plageParam.R
6f548332e2403b7c366d0838b4ad7bd4 *R/spatial.R
b32e5e7a107cfd23ad602db4e14b214a *R/ssgsea.R
5e49b0f2c051485afe7be351008aeca9 *R/ssgseaParam.R
c8dee7123a693721efea26dd4271107b *R/utils.R
51586e990aece5f06fa725f6f7a16450 *R/zscore.R
3e07215961f4be48d31469c54c1ec83b *R/zscoreParam.R
9c6efd7ddf2d97709f75552290099051 *R/zzz.R
37a7cdb041349afae7062bd64f253e21 *README.md
76e123f5dcc8dee07678412adc0a2a84 *build/partial.rdb
b9337b965f021b04e34f7605535320cc *build/vignette.rds
453d5f90bd6225b9bbf8fa9b9dd1e516 *cleanup
f1b7a918db657cba60304eb978b2450f *inst/CITATION
0fd190daba370306da0d9760dfcf0c45 *inst/doc/GSVA.R
00803d8911a4d5e22c438dd5e7447911 *inst/doc/GSVA.Rmd
32c087f4e2f336b777041cd7e24c8a00 *inst/doc/GSVA.html
9b2b55130ab0f234c0e77b16f72bced5 *inst/doc/GSVA_scRNAseq.R
bcd0dd7df8f1e20110f0e46f9762903b *inst/doc/GSVA_scRNAseq.Rmd
b9cd8817430b0868cfb7d7e52894a015 *inst/doc/GSVA_scRNAseq.html
d6e6f1223267a06705b40afe7dca4a97 *inst/extdata/cache4vignette_leukemia_es.RData
bf968c2f1b5abd82360ced0ad33aae9e *inst/shinyApp/argumentsDataModule.R
25e2b694159c4e7d07f774614d9a3c58 *inst/shinyApp/closeModule.R
dc214dc088b1cd01628804b5296afb06 *inst/shinyApp/downloadModule.R
9cdb81086c4211775369cd3474d469e8 *inst/shinyApp/geneSetsModule.R
2c65b8e76c0322d7ed8ee293f2c898ec *inst/shinyApp/global.R
864045a809dcb3b5279972f874e20318 *inst/shinyApp/matrixModule.R
15da683e3de9cbf03c45be58a0de0d41 *inst/shinyApp/modalGSVAModule.R
d767155a0a53077a837552b5a9537ce8 *inst/shinyApp/plot1_Module.R
56a93a0297bd15075a35e940e6718571 *inst/shinyApp/plot2_Module.R
7fb0745614ce1f6818ae24101df1f571 *inst/shinyApp/plot3_Module.R
b651b3e5eb4ace75f5358a3d900c8057 *inst/shinyApp/server.R
bed624bd4a37319dce3c5d3351299803 *inst/shinyApp/ui.R
c6fd28f6180768396f84bf00f43a644f *inst/shinyApp/www/GSVA.png
871bcb8b39094743ba2792a9e8f0017c *inst/shinyApp/www/style.css
8ea688e5dbc85aebe0926fd02650bc0f *inst/unitTests/test_genesets.R
d68a20a45ce33d521ff93037170cd311 *inst/unitTests/test_gsvaCcode.R
2b631ae03633fefa230caa151ec5ba1f *inst/unitTests/test_gsvaRanks.R
1afe2fcf92571fbf4ad51fce1323fb67 *inst/unitTests/test_inputdatacontainers.R
500f835c312fb009270c6c707e265d7e *inst/unitTests/test_navalues.R
704e4200f263b573455ec9bd5d52f832 *inst/unitTests/test_newAPI.R
da861e4c94aa751166f72340321f6b5e *inst/unitTests/test_params.R
89452b3c7fdbf7ea365c5f6f14881abf *inst/unitTests/test_sparse.R
9775e961ead52fbedfcc2aa117c2f888 *inst/unitTests/test_ssgsea.R
dccd81e67deece23e396e51881156eb5 *man/GSVA-pkg-defunct.Rd
3d0d25909987fa708c944470179e4766 *man/GSVA-pkg-deprecated.Rd
16deb4b999c70eeb3d9fa9359432fbff *man/GsvaExprData-class.Rd
92ea07497bde8581dfd1b4100ae90377 *man/GsvaGeneSets-class.Rd
f0cd1cb3316d8d8dff1cba0a76c2a361 *man/GsvaMethodParam-class.Rd
b9a450cf9f6b69fa27fcb0d40c18cb91 *man/computeGeneSetsOverlap.Rd
15095a35bbf2d21cda8cb25d430bdff3 *man/deduplicateGeneSets.Rd
7e46d890bd243147c0b792340742cde2 *man/filterGeneSets.Rd
8160b116d8cdaba6138989e33c005265 *man/geneIdsToGeneSetCollection.Rd
887872f227054e8afb88c0fa474ed09f *man/geneSets.Rd
d6bd3a936e714930c288081d79946ac2 *man/gsva.Rd
f4386e990289e443b5c28d543de9a2bd *man/gsvaAnnotation.Rd
87d4eeff0a682d7ede2a9ab256f225c6 *man/gsvaEnrichment.Rd
742ff0cda27cd1549fa099be2855f273 *man/gsvaParam-class.Rd
e9fa29978e0a8cb1187ba3c00a1d7295 *man/gsvaRanks.Rd
ad6838f00778b4e20abcd2515b815c22 *man/guessGeneIdType.Rd
c3d8987b5e4eaf2530fb956cd80e4b0a *man/igsva.Rd
3145df06faed2f340fbec832134537b2 *man/plageParam-class.Rd
521d3b53f205a16bd7b7f3617d5e4af3 *man/readGMT.Rd
4d46b8819e4a11a796de21e8c3471c3f *man/spatCor.Rd
e6f03e8f4b9138a266fcdbb8b728581e *man/ssgseaParam-class.Rd
1512f43c7a1b287b95738e177be3bcfc *man/zscoreParam-class.Rd
4ffcf8ea4fa90b49a26ec27a254a4b73 *src/ecdfvals.c
c92e0d73cfc75fe2cb24efbef67775a6 *src/kcdfvals.c
80f98db69614496ebe8c2772743187c0 *src/kernel_estimation.c
cbe1f074eaa22623a9c591775ea67c9e *src/ks_test.c
cbcee9a9ba58fd18ba3c0950f3bc575c *src/register_cmethods.c
821bd608d495fbab5e1a337b578fc0ed *src/row_rngs_nzrngs.c
eb2d628aed74f119496edf8a2eb36cdf *src/utils.c
f2310c7773e0506a7998fe8de54969ac *tests/runTests.R
0f0b2b311b69698b52532c4cbf123b15 *tests/test_gsva_newapi.R
8c29672b60d2f44b17bb143e0be9ed20 *tests/test_gsva_newapi.Rout.save
1acc9a45221e1755a3561b5e56b2495e *tests/test_plage_newapi.R
758da4dc726ec788f89f741aad811027 *tests/test_plage_newapi.Rout.save
f9e8c5538f10663ad3b18cfbc7055b71 *tests/test_ssgsea_newapi.R
19da3a1db67ab043c5ffa5f8ba84e2b0 *tests/test_ssgsea_newapi.Rout.save
558b265dc798838662e1e214a3155035 *tests/test_zscore_newapi.R
17ef6b670e8c0334f9c456df21991b7a *tests/test_zscore_newapi.Rout.save
00803d8911a4d5e22c438dd5e7447911 *vignettes/GSVA.Rmd
2c6010cc74749bf01d7b351307dbca35 *vignettes/GSVA.bib
bcd0dd7df8f1e20110f0e46f9762903b *vignettes/GSVA_scRNAseq.Rmd
7f8eb02c3a715cc27c9e6954bd8d3b38 *vignettes/methods.png
a407c8f86caaae0ecbe41d26a3e88319 *vignettes/webapp1.png
93e0a4fffed5119c01f62a4751d13f03 *vignettes/webapp2.png
