b87c375e07debe3ec2d2b25de4b98528 *DESCRIPTION
f376eaf72521830982ee78ad4efffbe6 *LICENSE
a120476844188bda8740caf99b84cab8 *NAMESPACE
1fb5c44cba65c18fab1a89222f35e464 *NEWS.md
70e46d412798ae0f27e3f976c2012263 *R/JSEM-internals.R
a7e30e573017b88431fe200866348f33 *R/aggregate-features.R
c8bc94579e45cbe4a0874200855b5842 *R/all-classes.R
0b8762056199275ca98e7e3e545de449 *R/all-generics.R
0ad62e586b2ff4c8798a888b8a0b982c *R/all-methods.R
1ccd50d9d91417aa156205a8bcac8961 *R/clustering-internals.R
b404cd830cf1ae7fb7b5ce043975b954 *R/initiator.R
147d88c96d3830c81cfd71f763ec9433 *R/primary.R
5cb913fb01c2590f0c6b3e972ed3c9a3 *R/start-here.R
e838777b38e6a0efcc1d02afeddddbb4 *R/utilities-exported.R
7e400e5d07d5e48004c01d931105d762 *R/utilities-internals.R
147976a9d64b897a4a9fe042f53d8bf7 *README.md
3dd9dc906109a8cb22e5baea9daf1abd *build/vignette.rds
4831d69ff2a3eb377ff7c1618aa2587e *data/T1Dmeta.rda
2a0603c80cd76f78447eb8e91b93143a *data/TEDDY.rda
aca70522c7a0818e37bd243bfe5756d3 *data/datalist
eba39c46e0541306a5bb0acf032e8a93 *data/dnw.rda
3e7b0985abe22858465c0ebdea383d4e *data/metab_data.rda
337aa962cc1e14642e7a40e789ffe809 *inst/CITATION
5af2c1fb37580a9705e3e64ff6b2f17b *inst/doc/DNEA.R
a79ece83481d5c5b48f98ee7b45b116f *inst/doc/DNEA.Rmd
c277b72c1a153564929898448eba6e69 *inst/doc/DNEA.html
2630086c5e1502500c300b46c1a2c222 *inst/scripts/LMadjust.R
4333932247397a4f51912c4ae1332331 *inst/scripts/README.txt
db99083ab2c900cd1cda25c4521a411c *inst/scripts/TEDDY-IA_process.R
46c77e000969a72e209014cc57dc9222 *inst/scripts/TEDDY-T1D_process.R
c28e490a072e19c8d4faadea0990e09a *inst/scripts/TEDDY-metadata_process.R
e7baa676b4a318577baf02cda22c873e *man/BICscores-methods.Rd
032e7a08a33590fabefa6fc91b888e62 *man/BICtune-methods.Rd
e719abfdb84ff3eeecd16ab9caacd70f *man/CCsummary-methods.Rd
3ba5d7dc38517c770b787bda19856165 *man/DNEA-class.Rd
69398a5f0cf6232c851c7677b9e67591 *man/DNEA-package.Rd
83c83b0dc45c0cf1ae039d37d65781e5 *man/DNEAinputSummary-class.Rd
acc7139f72995f439eba0e8259285f26 *man/T1Dmeta.Rd
35d226edc1ef5ff4b35eb51cace7c47d *man/TEDDY.Rd
1836c97036a2a527100f7bbef7818d19 *man/addExpressionData.Rd
b0000c7ec5849e5fc9a4258ffde5429c *man/adjacencyGraph-methods.Rd
276b2daa43da4cfb6842f0b9ab806787 *man/adjacencyMatrix-methods.Rd
84d915d5e335ca3f80eeed98460415dd *man/aggregateFeatures.Rd
7e4123138fda090097bb44c69e27f1c7 *man/clusterNet.Rd
35c9b581df9262b5f9f02c42d78094d6 *man/collapsed_DNEA-class.Rd
34fb2a8a4e8de59d96c3d2387b22b4ec *man/consensusClusteringResults-class.Rd
77c17c9598fc6ce0ba31e71861a58dec *man/createDNEAobject.Rd
b1401043c058775b4f24d4fbf39f8ee8 *man/datasetSummary-methods.Rd
e526aa5851645c0a0d3d3e80d69bdcd2 *man/diagnostics-methods.Rd
461e057aa5ec6fe1d4f580660036ab4b *man/dnw.Rd
2171346654ee3a12545a363a8cc5db72 *man/edgeList-methods.Rd
4cd31e2b592e69eb90a80613d7d867f4 *man/expressionData-methods.Rd
640fdeb96082d2591ffc6bed317c8546 *man/featureNames-methods.Rd
289b990ad0f9a0f435ba9035bf191a0e *man/filterNetworks-methods.Rd
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bad866871719bd500d8086b5f2f4041a *man/getNetworks.Rd
26d0db18bcf1b6c379e5c2a03e00b9b1 *man/includeMetadata.Rd
ae0066ba3992738d32b73588df5021b7 *man/lambdas2Test-methods.Rd
653b115959995332000abab1d66f6d0b *man/massDataset2DNEA.Rd
5c6116e59099c35f33bb66a8c4e62e07 *man/metaData-methods.Rd
1702228643f72611376c0f692cbde0e9 *man/metab_data.Rd
8239155bf12bcad52ad6f6a992f1d07a *man/netGSAresults-methods.Rd
345be3a934f5c72251e8ed5a8d1a2f83 *man/networkGroupIDs-methods.Rd
a278a6d0fdeccbfecff8ce8e701e251f *man/networkGroups-methods.Rd
47d9f80de7391754cdfa117ddc501add *man/nodeList-methods.Rd
2772977ab2458b7c61d9e71ae1299c29 *man/numFeatures-methods.Rd
7edb89cb1d0a4bb299f40967855d1d75 *man/numSamples-methods.Rd
7f6280c39ba18db0ad52674e3a848bcb *man/optimizedLambda-methods.Rd
35f992c2d774e4b0d2d1c5f7fa418948 *man/plotNetworks.Rd
b1d15d7dc097f63eea63a3b658b68c94 *man/projectName-methods.Rd
e1427cc9ab7d13d6912b20285f52f62e *man/runNetGSA.Rd
ea9e9882ee3f9db78c6e5e9487240ee7 *man/sampleNames-methods.Rd
a6e41f818ab407386815ee6093b91a8a *man/selectionProbabilities-methods.Rd
612ddbbcb7d1f8d51cab97faf5fbf3e6 *man/selectionResults-methods.Rd
bc6e3272d80aab13e178f26c744580a5 *man/stabilitySelection.Rd
09ce910d068ecaae15f2a14e2bcc894e *man/subnetworkMembership-methods.Rd
65236734030e74ee2f113b67fb898a3f *man/sumExp2DNEA.Rd
23e46091b5697a8f27a575257462a2a6 *tests/testthat.R
a006b9831d8523aeb8c4f8bcfa932f7e *tests/testthat/test-BICtune.R
8dfd46f888126713258ef0299e957dc3 *tests/testthat/test-aggregateFeatures.R
9a1d620ea2fd36f2941016b1d512ad66 *tests/testthat/test-clusterNet.R
df5ae4775bbb6ecc1383661e00e36a2b *tests/testthat/test-createDNEAobject.R
776ddcef9c8070e5a7d23751eb68245e *tests/testthat/test-getNetworks.R
0bbb336d7ef62e6f1fab65e19b4437f1 *tests/testthat/test-runNetGSA.R
57a8f71652adf0fa6064102989cf1edf *tests/testthat/test-stabilitySelection.R
20608dbed8b9363e982b8c6b0e80d488 *tests/testthat/test-utilities-exported.R
2d9dfeb815ebc57486ca899e34069148 *tests/testthat/test-utilities-internals.R
be506a9637dc638ec512f889f8a72cff *tests/testthat/testdata/test-T1Dmeta.rds
316ccdaf4872ceed553aebdf620cc99b *tests/testthat/testdata/test-TEDDY.rds
6fe628bc37285f3609b86d5693303ffa *tests/testthat/testdata/test-TEDDYresults.rds
a79ece83481d5c5b48f98ee7b45b116f *vignettes/DNEA.Rmd
8ab5af6b6fe5ec9677dbffcb505a5189 *vignettes/DNEA_bibliography.bib
