086b491b68710dfe9b970d8e36032ad0 *DESCRIPTION
3318596e00e41db405b0eddd9e96781f *NAMESPACE
3dad0c755459b06f628b2d72e4e1112b *NEWS
50d5d70967c96a6edc7d9a6b1b5c78f6 *R/RcppExports.R
eff7d0a220751493b7ee9554f6a30fd0 *R/analyse.barcodes.R
16f6871ab226348849e68cabb8c7b84c *R/barcode.set.distances.R
1cca03f34fa47adb458ca67daa405160 *R/create.dnabarcodes.R
0087cd4839aa1ff9b767b5941c77c9a8 *R/create.pool.R
aa670e50004d99e7e0bdcceaa78e0421 *R/demultiplex.R
5383ec10bf5e4ee7c84f0566f21eec36 *R/distance.R
d141259308a98ba923b56e362fe20536 *R/test.code.falsification.R
1e014380783b9f3f0b153a0b3a568c05 *build/vignette.rds
37986c08bef9be5918ec39279952f043 *data/mutatedReads.rda
45ee1db40a3af6ed862b5e42d64fac37 *data/supplierSet.rda
0beb0b1b8e1ee38de938fa37060949b9 *inst/CITATION
b649043251b9ee67c86a82ae73e8c145 *inst/doc/DNABarcodes.R
15089321debb4caa3369e1ea36cff691 *inst/doc/DNABarcodes.Rmd
158e0c6deb017a1db7f6322cc28849fd *inst/doc/DNABarcodes.html
4ef2dcaa14546f914314c4b97b51d1ae *man/DNABarcodes-package.Rd
90486ebf0e16ea8fa27005c0dfeee833 *man/analyse.barcodes.Rd
102bf26d956f43947c47cbf16c8746e9 *man/barcode.set.distances.Rd
7f997aefc86553866f054375dd1c37ea *man/create.dnabarcodes.Rd
1233dc2a2f5cc16a5b2538b31df4db39 *man/create.pool.Rd
8c051881d30e7bd7f37d7561014497e2 *man/demultiplex.Rd
c1e049bc7a0ce238749f8e7dfd4a2475 *man/distance.Rd
73a5c86d79f6b78a4266669bbc336093 *man/mutatedReads.Rd
31f48642bfafbdb3e5b1017fe3097465 *man/supplierSet.Rd
f7d6146db523d2f9e93e6ef3ad6ca356 *src/DNABarcodes_init.c
5ca988a00113725d44d96bda6578deb7 *src/Makevars
098f6fd98cf57fbb9da90143552da2d4 *src/RcppExports.cpp
d5764ce818596546b277c6b9511b7eb8 *src/analyse_barcodes.cpp
a4885ca8c4d6c404fc91d55e39675cce *src/barcode_set_distances.cpp
6d774ca34ec80e4f7b2db32797282b8c *src/cachedistance.cpp
7c7aaf90264dcef775b2b4fd99638de1 *src/cachedistance.h
28eb699cfb3abe6d2a82ba76908645fe *src/chromosome.cpp
ef5d1bdff3a2ed634210c86ad49e7b8c *src/chromosome.h
0d8fc74f723fbe4ccf8723d7271c30ba *src/code_falsification.cpp
bfd0e3bdfc5a98fa079299b610a8b2d7 *src/conway.cpp
60e4441bc8bb18a8bfd94f3232231351 *src/conway.h
c2ce86a9ba35775815d7bf8e8c1f5605 *src/create_distance_func.cpp
c34f90d6ab4794c2f3a5be865661d12b *src/create_distance_func.h
add2ab66c3d882c4bdd3d766a5507324 *src/create_dnabarcodes.cpp
702bc12b8481af7178148dfc4bd700f3 *src/create_pool.cpp
67172aa1fd753e346708ed2c889a36fc *src/demultiplex.cpp
4f99062b1b9eb10cea798f607bb66e01 *src/distance.h
fe46857f8a8141cdc163ec0521e8495f *src/distance_for_R.cpp
889e73649ed45a436840e7a83c61ce31 *src/genericchromosome.cpp
6ce284b0a517b2aeefc4d135923b682b *src/genericchromosome.h
9d4d9bdf9b61cea77de890b887afc385 *src/greedyevolution.cpp
d666926c1f68de16970af01aef1b156d *src/greedyevolution.h
20ecef634a43f384ded6449291a15fa7 *src/hammingdistance.cpp
1bb9eafb19f7cf64294ca1a111b04c22 *src/hammingdistance.h
26697f2ea30fc95b2a61780fc074e279 *src/helpers.cpp
bb32460059e5b00077ebcd54bb99a6a0 *src/helpers.h
73f87f3efb400362b6dcc6c175d73d90 *src/levenshteindistance.cpp
9f90ca4404b5cb4f40f2e90778d9b640 *src/levenshteindistance.h
464aff3803632e09136940a5f73be128 *src/maxclique.h
c56560fee8187365c2797cb31bc23a4b *src/maxclique_pattabiraman_heuristic.cpp
e0d54c4838d53e459cc22703cb81ca58 *src/maxclique_pattabiraman_heuristic.h
5fc05aceccf5a9ebe9ef4f0c4e487ba7 *src/phaseshiftdist.cpp
e9dd025fa802817c5fbc8f47ce5870b5 *src/phaseshiftdist.h
6afc6875e5f10ec8dfff0890e7d9b2d1 *src/sequence.cpp
89b0efc368f8ff64507ca20269031c56 *src/sequence.h
d7f5f768d71564edf5fb2e1dad209f49 *src/sequencelevenshteindistance.cpp
d3244ba6beb48bdcf14d92d9eedbc7c9 *src/sequencelevenshteindistance.h
2b52a2df43d52d374058a1b7b7c5bf32 *src/sequencepool.cpp
2b3fe3c96cead842869f11b3ec582f29 *src/sequencepool.h
15089321debb4caa3369e1ea36cff691 *vignettes/DNABarcodes.Rmd
