821c98c750424eb0c2c7dd919e7fdbcd *DESCRIPTION
7a63ea4edde57d06c6d849c1fca945e3 *NAMESPACE
5650bcae8d109518348e0fe8695a4232 *R/AllClasses.R
dc5910c495bd0d99d354ac27f269a66b *R/AllGenerics.R
424d45bd10c66bdb5f7241ceb847631c *R/DMCHMM-package.R
4db98a9ef35fc652b9eaee6003d785ae *R/cBSDMCs-method.R
61edc379f645c284462c1a7d9def04a9 *R/cBSData-method.R
3e10dfaf1e57e76808790907ebd8d918 *R/combine-method.R
c4fb8c3174dfd0d49ac97eeb692f49a8 *R/data.R
282d1393d40b4f3fb107e5c64a724395 *R/findDMCs-method.R
38bac14c781779526ace496d72b02a7a *R/manhattanDMCs-method.R
44d87a98a2c43eb8b0bdb85a62cea675 *R/methHMEM-method.R
d82033b63bb03a7456de1ed84c3f49eb *R/methHMMCMC-method.R
9fb5a47c1b3e90eb3a1f14a9673e3d05 *R/methLevels-method.R
2adefe488b2c925963c16539fd8a1338 *R/methReads-method.R
f1f903adbaf81fca54fa2e77810685cb *R/methStates-method.R
d94881b66cb22cdf396f2740b61b3a9a *R/methVars-method.R
47d71c45f0af3b0746c07e75c4d09719 *R/qqDMCs-method.R
20d8234636a04e8581a013f0ef82dd30 *R/readBismark-method.R
8961877937c8a4f74888e0ec83b1a4ed *R/totalReads-method.R
cadbb2720b9b59e20c2ef6084a25eb42 *R/writeBED-method.R
efcdd011f7b00af3e9fce8de0815aecc *R/zzz.R
93ff14ed25c21d6f8afda2c2d437b8dd *build/vignette.rds
9894cfa4b37fdabaabcf746988946122 *inst/CITATION
f578aa85440df795106d4c90fe099221 *inst/NEWS.html
7e713824e94603b38b0069bfa72b33cb *inst/NEWS.md
f53c40e270bddde3003651247ead8990 *inst/doc/DMCHMM.R
a74a473f23bf60fb49672fea6a0df30f *inst/doc/DMCHMM.Rmd
97b074912d075a3535f0a6b873e38a88 *inst/doc/DMCHMM.html
e4a8d10792d871f359df10f12ede32a5 *inst/extdata/blk.BCU1568_BC_BS_1
69b3365531214cb5f7422a7409a8a3f3 *inst/extdata/blk.BCU173_TC_BS_1
e7b35ffb5644a50e3bcc1b48673b031a *inst/extdata/blk.BCU551_Mono_BS_1
7d97a29b12a5c06ffb5860f7039652ea *man/BSDMCs-class.Rd
bdcc2c4454ff69a8cd00225f3aeab71e *man/BSData-class.Rd
333b120812512802bbde463f8ded3036 *man/DMCHMM-package.Rd
159be6fcb001ba0013d0e2107c14e04a *man/cBSDMCs-method.Rd
5e78388760d81297fa48053d8a237ebc *man/cBSData-method.Rd
c480de791a85e673b7dc7a8501b8a1ad *man/combine-method.Rd
13b0dd4b494f0ce715e40e8311505d29 *man/data.Rd
1de29f7480476ac2900612d972eee8d4 *man/findDMCs-method.Rd
18daaa2e7866e9eaac7ec5ac9baebad5 *man/manhattanDMCs-method.Rd
16c758021dafa7c52176ff509f4a3180 *man/methHMEM-method.Rd
8d98d4605304411992829406682380f7 *man/methHMMCMC-method.Rd
bbf69ec603419658e00d820468625baf *man/methLevels-method.Rd
7f7c3da8d2593dcbc044c2fe62ca068a *man/methReads-method.Rd
d5ec1fa67201a20e08ae14fd7ba24915 *man/methStates-method.Rd
450f1679d92ea821498b30e5fcc64bb5 *man/methVars-method.Rd
16e3468a19707937480b908e3e4e89fc *man/params.Rd
5744974cbfdc9db23898b8168bee5896 *man/qqDMCs-method.Rd
2bc1e7d42f928a6e74576ed8a5fba30c *man/readBismark-method.Rd
94d915e8d04b2a89cf9ddf65ae3b4fa3 *man/totalReads-method.Rd
ed0a4ad1bc383a91197809764026d242 *man/writeBED-method.Rd
a83a87be237181a7db3f5a63da282b4d *tests/testthat.R
f2bc154d13822e612cd57feaa60af404 *tests/testthat/test-methHMEM.R
a74a473f23bf60fb49672fea6a0df30f *vignettes/DMCHMM.Rmd
