d17bbee4631d27487c3044c985023468 *DESCRIPTION
621ae1eb89887f5160e132e7c62978fd *NAMESPACE
e48bab80703745a93d3cb9eacd849e86 *NEWS
da8d8e9716d289ca04d386911c447dd4 *R/SLBP_K562_w50s20-data.R
3d48b092206fe38b2770ef452a0c17c8 *R/extract.R
8e44f9b392c8f4874149da43228b4907 *R/preprocess.R
d69d6a51e8fb5342f4d0b03cb45144ba *R/readers.R
87546c293454db549bcbee160c58b7c6 *R/resultsDEWSeq.R
4cd9c4ae68a8784e09e7273ac18525a3 *R/slbpDds.R
f8ac62d6f8408f320950ecc73f84de6f *R/slbpRegions.R
e2c0cd7cdd016b3f36e81bc60641db1d *R/slbpVst.R
698201dcc6bad9a51942acd94f0b1a8d *R/slbpWindows.R
9fefd8fc28da4b628593afa766e6a6d2 *R/toBED.R
d3eaa999b81467f600298fa5a7f565fd *R/topWindow.R
4a7cbc191fbb23d981aa0da9509b33a0 *README.md
fc5bead2519322692d1f5a7d7d4255ab *build/vignette.rds
05701c8ff87478f3318b4c7f60582b0f *data/SLBP_K562_w50s20.rda
93bcb4d8938605acd7c15e4bc0c98371 *data/slbpDds.rda
d0b8807979fdb74b408c8a6203cfaea2 *data/slbpRegions.rda
93062e99775c4123be899fbe7f365ddc *data/slbpVst.rda
06d57c026cd9348102b26675a9eb30ce *data/slbpWindows.rda
d41d8cd98f00b204e9800998ecf8427e *inst/CITATION
558f7c105524f00beede37d2bfbcb70f *inst/doc/DEWSeq.R
0872c8be62e20980146ba3e8fd7e9fda *inst/doc/DEWSeq.Rmd
57141c816698a008ef78f75ab1b88292 *inst/doc/DEWSeq.html
2cc7cb90d3f27ca18cd8310241f641e5 *inst/extdata/SLBP_K562_w50s20_annotation.txt.gz
724e3ba72276cfb412449f06266ddbbe *inst/extdata/SLBP_K562_w50s20_counts.txt.gz
c145b1d3c94332d878c0ab2449b08407 *inst/extdata/SLBP_K562_w50s20_max_counts.txt.gz
1649fb17831985d0cdd47bfc83b38437 *man/DESeqDataSetFromSlidingWindows.Rd
4fc9bbac08246b505ad434c0f855c3fc *man/SLBP_K562_w50s20.Rd
560a52a23de579f7e552e695a5c83ba7 *man/dot-readAnnotation.Rd
471aadd3ef49f6fbbfde4cba3bc5bc46 *man/extractRegions.Rd
370f383082f1c1da50f81007d7554002 *man/filterCounts.Rd
35854408b9b6d00bb6d94b78de37b042 *man/resultsDEWSeq.Rd
63045b87bf983311f3e532172c09ccb3 *man/slbpDds.Rd
532cb147fed133a1f8b053e8d2ace831 *man/slbpRegions.Rd
72f2c3fa377c7d74a45c492540fbb04c *man/slbpVst.Rd
49beb433b8402663a1af0d699d3addc9 *man/slbpWindows.Rd
02f557e289c5709cd6f7b65feb67e5cf *man/toBED.Rd
fdea16690e2c02f46b2b659220c25794 *man/topWindowStats.Rd
a5a76d2ae2748cfe45eb90123be3ceed *tests/testthat.R
3b8aa1cb4e17cfef8e67f983981447a7 *tests/testthat/test_DESeqDataSetFromSlidingWindows.R
1325be3825111372b1c9eb295e333786 *tests/testthat/test_extractRegions.R
8f2493b4551b84886b3ec039061cad2e *tests/testthat/test_resultsDEWSeq.R
0872c8be62e20980146ba3e8fd7e9fda *vignettes/DEWSeq.Rmd
1ad38d1975e2d35af151ae8fe99a913d *vignettes/binding_modes.png
03b6c037a0afdbc55193427ca125813b *vignettes/controls.png
d14a78222bda478c44bec99fcba68e4a *vignettes/crosslinking_chance.png
1b4df66ca3682ac558f35685d271b5a0 *vignettes/dewseqoverview.png
b48a34d15325cba4b46b551a2d4bf5da *vignettes/digestionpatterns.png
ffa52a2e70c3b3d173f4c148355ce56a *vignettes/earlytruncation.png
5850f19c3505f0da16a05e5f6ce8bb82 *vignettes/htseq-clip.png
427ccbb5b16c6d1c46102385baf344f3 *vignettes/library.bib
c06ced19b590570e96d2acadc2bde475 *vignettes/overlapping_sliding_windows.png
26e1d55cfdae6ae5cd7135732947b730 *vignettes/readthrough.png
9771919c44e7d37cf6d20a90bfab9ea8 *vignettes/truncation.png
1e093ec061f31cdd7ff034621a544263 *vignettes/truncationsite.png
